Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0091.Seq
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.02c |qcr7||ubiquinol-cytochrome-c reductase complex subu...    64   2e-11
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    30   0.47 
SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    29   0.63 
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    27   4.4  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    27   4.4  
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    26   5.8  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   7.7  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    26   7.7  

>SPCC737.02c |qcr7||ubiquinol-cytochrome-c reductase complex subunit
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 137

 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 32/63 (50%), Positives = 43/63 (68%)
 Frame = -1

Query: 257 SLRRLPSHVVDERNFRIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLERE 78
           +L RLP     +R +RI RA+QLS++  ILPK EWTK EED  YL P++ +V  ER ERE
Sbjct: 54  ALSRLPKMESYDRVYRIRRAMQLSIENKILPKSEWTKPEEDYHYLRPVLAEVIAERKERE 113

Query: 77  QWE 69
            ++
Sbjct: 114 AFD 116



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 328 NLSGFNKYGLLRDDCLHETPDVTEASADFHPML 230
           +LSG+ KYGL  DD + E  D T+ +    P +
Sbjct: 29  HLSGYRKYGLRYDDLMLEENDDTQKALSRLPKM 61


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = +3

Query: 579 VLRRSKNFTS-NVAIRMPPVI--PINHYLGVLKTNKIEPRSYSIIPCTKYSRQHF*PAFE 749
           ++ + KN T  N   R+PP +  P +H    + TN   P   SI   + Y +QH  P   
Sbjct: 292 LVSKQKNITKLNNEKRIPPQLAQPTSHVPSFIDTNS--PSMPSISSVSSYQQQHRIPKLN 349

Query: 750 HSNWS 764
            SN+S
Sbjct: 350 ASNYS 354


>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 9/60 (15%)
 Frame = -1

Query: 680 YFVGFQN-SEVMINRDNWGHSYCDVRGEILG------SSQD--EHQRKHLPKVFSSIKNE 528
           Y VG+ N + ++++   WGHS+ +V  E+L        +QD  E ++K+L ++ +S + +
Sbjct: 142 YIVGYPNEARLLMDNFKWGHSFFEVNEELLDIYAQCHDAQDIQEKEKKYLEEMEASYQEQ 201


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 383 HHGSCSKSHFIDSQIYDFNVILT 451
           HHGS SK H I  Q+  ++++LT
Sbjct: 474 HHGS-SKKHKIAEQLMSYDIVLT 495


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 323 KIVGPFAEAVTSVNSRGSESHHGSCSKSH-FIDSQIYDFNVILTQTTRNS 469
           K + P ++ +T  N + + SH GS +KSH F    ++D N  ++    N+
Sbjct: 320 KELSPHSQ-ITLSNVKNNHSHVGSQTKSHSFATPSVFDNNKPVSSDNHNN 368


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/47 (21%), Positives = 25/47 (53%)
 Frame = -1

Query: 212 RIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQW 72
           R+ + +  S ++  +  ++ + YE D   LT  + ++E E + ++ W
Sbjct: 278 RVKKDLFASDEEDDVSADQLSSYERDKARLTQQIRELEAENVAKKSW 324


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 340  KWAYNLSGFNKYGLLRDDCLHETPDVTEAS 251
            KW + +  F++YGLL D+   E  D++  S
Sbjct: 926  KWIFKVQHFSRYGLLDDE--EEENDMSSTS 953


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 635 NWGHSYCDVRGEILGSSQDEHQRKHLPKVFSSIKNE 528
           NW   +  ++G I  SSQ E    +L KV  SI +E
Sbjct: 123 NWNDFFASLQGVIAASSQSEFSNFYL-KVLLSIGDE 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,336,332
Number of Sequences: 5004
Number of extensions: 67341
Number of successful extensions: 212
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)