Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0091.Seq
         (845 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0379 + 33505242-33505347,33505474-33505631,33506127-335061...    48   7e-06
07_01_0744 + 5687269-5687365,5687466-5687689,5688307-5688354,568...    36   0.054
08_01_0907 + 8949102-8949160,8949662-8949842,8951816-8951941,895...    31   0.87 
11_06_0649 + 25882657-25882782,25882983-25883175,25883354-25884120     29   6.2  

>03_06_0379 +
           33505242-33505347,33505474-33505631,33506127-33506174,
           33506851-33506919
          Length = 126

 Score = 48.4 bits (110), Expect = 7e-06
 Identities = 25/61 (40%), Positives = 39/61 (63%)
 Frame = -1

Query: 257 SLRRLPSHVVDERNFRIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLERE 78
           +L RLP  VVD R+ R+ RA+ LSM+   L + +  +      YL+ +++ V+KERLERE
Sbjct: 54  ALERLPREVVDARHQRLKRAMDLSMKHQYLSENDQAQQTPFRGYLSDMMDLVKKERLERE 113

Query: 77  Q 75
           +
Sbjct: 114 E 114


>07_01_0744 +
           5687269-5687365,5687466-5687689,5688307-5688354,
           5689057-5689125
          Length = 145

 Score = 35.5 bits (78), Expect = 0.054
 Identities = 17/33 (51%), Positives = 22/33 (66%)
 Frame = -1

Query: 257 SLRRLPSHVVDERNFRIVRAIQLSMQKTILPKE 159
           +L RLP  VVD RN R+ RA+ LSM+   LP +
Sbjct: 51  ALARLPREVVDARNQRLKRAMDLSMKHQYLPAD 83


>08_01_0907 +
           8949102-8949160,8949662-8949842,8951816-8951941,
           8952082-8952092,8952237-8952360,8952447-8952546,
           8952807-8952849,8953033-8953153
          Length = 254

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 257 SLRRLPSHVVDERNFRIVRAIQLSMQKTILPKEE 156
           +L RLP  VVD  N R+ R + LS +   LP +E
Sbjct: 46  ALARLPREVVDAHNQRLKRTMDLSTKHQYLPADE 79


>11_06_0649 + 25882657-25882782,25882983-25883175,25883354-25884120
          Length = 361

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -1

Query: 230 VDERNFRIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQWEK 66
           +D  +F +V    L+ +K  L KEEW + + +         + +KE  ERE+ EK
Sbjct: 216 IDIYSFGVVMLEVLTGKKPYLFKEEWKEEKREKCEQDGKNTEEDKEESEREEEEK 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,542,857
Number of Sequences: 37544
Number of extensions: 396420
Number of successful extensions: 976
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)