Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0091.Seq
(845 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006684-9|AAF39958.1| 130|Caenorhabditis elegans Hypothetical ... 53 2e-07
AL021447-4|CAB60285.3| 330|Caenorhabditis elegans Hypothetical ... 33 0.26
Z82282-10|CAB05277.2| 600|Caenorhabditis elegans Hypothetical p... 33 0.34
Z22181-1|CAA80179.1| 710|Caenorhabditis elegans Hypothetical pr... 31 1.0
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 29 3.1
AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical... 29 3.1
U29082-4|AAT92084.1| 279|Caenorhabditis elegans Troponin t prot... 29 5.5
U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot... 29 5.5
U29082-2|AAT92082.1| 350|Caenorhabditis elegans Troponin t prot... 29 5.5
Z54270-4|CAA91030.2| 1804|Caenorhabditis elegans Hypothetical pr... 28 7.3
AF002197-2|AAB53983.2| 486|Caenorhabditis elegans Hypothetical ... 28 7.3
U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction... 28 9.6
U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction... 28 9.6
>AC006684-9|AAF39958.1| 130|Caenorhabditis elegans Hypothetical
protein T02H6.11 protein.
Length = 130
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/64 (39%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Frame = -1
Query: 257 SLRRL---PSHVVDERNFRIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERL 87
+LRRL HV D+R R+ RA L++ LPK EWT+++++S YL P ++++E E+
Sbjct: 54 ALRRLNLQEPHVFDQRKIRLSRAHTLALHGEKLPKAEWTQWDQESWYLKPYLDEIEAEKK 113
Query: 86 EREQ 75
R +
Sbjct: 114 ARAE 117
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = +1
Query: 172 IVFCMESCMARTIRKFLSSTTWDGSLRRLQLHQEFHASNHPVT 300
+ F +A T+RKF S W G LQ H + VT
Sbjct: 10 VTFAYNGTIASTLRKFAWSNLWGGREYGLQFHDTYFEPAPEVT 52
>AL021447-4|CAB60285.3| 330|Caenorhabditis elegans Hypothetical
protein F19B2.8 protein.
Length = 330
Score = 33.1 bits (72), Expect = 0.26
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = -2
Query: 277 ETPDVTEASADFHPMLLTRETSVLYVPYSSPCKKQSYLKKSGQN 146
++P +TE FH +LL TS+LY+P +K SYL S +N
Sbjct: 188 DSPILTEDIIRFHSILLIA-TSLLYIPIMRHVRKFSYLPSSQKN 230
>Z82282-10|CAB05277.2| 600|Caenorhabditis elegans Hypothetical
protein T07G12.6 protein.
Length = 600
Score = 32.7 bits (71), Expect = 0.34
Identities = 23/91 (25%), Positives = 43/91 (47%)
Frame = -2
Query: 364 INRSDSLSKWAYNLSGFNKYGLLRDDCLHETPDVTEASADFHPMLLTRETSVLYVPYSSP 185
+N ++ +S+ N G+ + +DC TP+ E + F+ L +S+ VPY
Sbjct: 184 MNMTEMISEIDSNYEGYELFDDSSNDCTTLTPNCQEVESSFYRALSEAASSI--VPYQEG 241
Query: 184 CKKQSYLKKSGQNMKKIPYT*PQLLSKLRKR 92
++ S + ++K+ P +SKL KR
Sbjct: 242 KRRSSRRLSTLSSLKETVKVEP-AVSKLTKR 271
>Z22181-1|CAA80179.1| 710|Caenorhabditis elegans Hypothetical
protein ZK632.2 protein.
Length = 710
Score = 31.1 bits (67), Expect = 1.0
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = -1
Query: 233 VVDERNFRIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQWEKE 63
++D N +L MQ+ L ++ E+D LYL Q+EK+R +R+QW +E
Sbjct: 347 ILDTYNVLRKSNTKLRMQRKTLEANDYYD-EDDDLYLDR-TGQLEKQREKRKQWAEE 401
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = -1
Query: 191 LSMQKTILPKEEWTKYEEDSLYLTPIVE--QVEKERLEREQWEKE 63
LS+ K +L K++ + E++ L Q EKERLERE EKE
Sbjct: 216 LSLIKEMLKKQQEEREEQERLQKEQQERDAQEEKERLEREHAEKE 260
>AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical
protein Y54F10BM.2 protein.
Length = 1173
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = -1
Query: 191 LSMQKTILPKEEWTKYEEDSLYLTPIVE--QVEKERLEREQWEKE 63
LS+ K +L K++ + E++ L Q EKERLERE EKE
Sbjct: 216 LSLIKEMLKKQQEEREEQERLQKEQQERDAQEEKERLEREHAEKE 260
>U29082-4|AAT92084.1| 279|Caenorhabditis elegans Troponin t protein
3, isoform c protein.
Length = 279
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -1
Query: 152 TKYEEDSLYLTPIVEQVEKERLEREQWEKE 63
T+ E++ L + E+ EK +LEREQ EKE
Sbjct: 81 TEREKEEEELKKLKEKQEKRKLEREQEEKE 110
>U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein
3, isoform b protein.
Length = 1178
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -1
Query: 152 TKYEEDSLYLTPIVEQVEKERLEREQWEKE 63
T+ E++ L + E+ EK +LEREQ EKE
Sbjct: 915 TEREKEEEELKKLKEKQEKRKLEREQEEKE 944
>U29082-2|AAT92082.1| 350|Caenorhabditis elegans Troponin t protein
3, isoform a protein.
Length = 350
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -1
Query: 152 TKYEEDSLYLTPIVEQVEKERLEREQWEKE 63
T+ E++ L + E+ EK +LEREQ EKE
Sbjct: 81 TEREKEEEELKKLKEKQEKRKLEREQEEKE 110
>Z54270-4|CAA91030.2| 1804|Caenorhabditis elegans Hypothetical protein
F11C1.5a protein.
Length = 1804
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -1
Query: 206 VRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQWEK 66
+R I +S ++ W K + S L +++Q+E ++ ERE W K
Sbjct: 1526 LREINMSEYDADAYEKVWNKVQAPSRKLASVIDQLEAKKKERE-WTK 1571
>AF002197-2|AAB53983.2| 486|Caenorhabditis elegans Hypothetical
protein F20H11.1 protein.
Length = 486
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 250 RRLQLHQEFHASNHPVTNHIY*IPKDCRPIC*G 348
RRL++ Q +A +H V N + PK+ R +C G
Sbjct: 352 RRLRILQYLNAHSHFVDNSVMYSPKELRELCDG 384
>U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction
molecule protein1, isoform d protein.
Length = 1439
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = -2
Query: 157 SGQNMKKIPYT*PQLLSKLRKRGWRESSGRRNIK*DMA*WYYLIKINIAVKK 2
SG+ I + PQL GWR S N D +YY +K IA +K
Sbjct: 1320 SGRGSVNIRLSSPQLAQAYVSNGWRALSAYPN---DQLLYYYTVKALIAERK 1368
>U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction
molecule protein1, isoform a protein.
Length = 1480
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = -2
Query: 157 SGQNMKKIPYT*PQLLSKLRKRGWRESSGRRNIK*DMA*WYYLIKINIAVKK 2
SG+ I + PQL GWR S N D +YY +K IA +K
Sbjct: 1361 SGRGSVNIRLSSPQLAQAYVSNGWRALSAYPN---DQLLYYYTVKALIAERK 1409
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,164,612
Number of Sequences: 27780
Number of extensions: 367225
Number of successful extensions: 1110
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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