Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0090.Seq
         (861 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    25   1.0  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   1.3  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    22   5.4  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    22   7.2  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +1

Query: 337 SAGDPPGGARYPIRPIVSRITIHWPSFY 420
           S G PP G  YP  P   R+ I    +Y
Sbjct: 70  SGGQPPQGMPYPRFPPYDRMDIRAAGYY 97


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 104 SPRPSVATGLAPSTGKRPRSRRTWTG 181
           +P P+   G  P     PRS+R +TG
Sbjct: 262 APSPTAGAGGLPPQVPSPRSQRRYTG 287


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 20/66 (30%), Positives = 22/66 (33%)
 Frame = +1

Query: 67  SLSSNPTLRSVPLAATLRRYGPGTLYGKTAPFKTNLDRSRRDEKAEPPEHHISRYRLKQR 246
           S    PT    P    L  YG G  Y   A  K     S    KA   EH  + Y  K  
Sbjct: 57  SAGLQPTTGYYPYDPALAAYGYGAGYDLAARRKNATRESTATLKAWLNEHKKNPYPTKGE 116

Query: 247 DSVWAI 264
             + AI
Sbjct: 117 KIMLAI 122


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 481 LSPAGVIAKSPHRSPFPTVAQLNGEWQIVSV 573
           LSP+G        SP+P    L+G   + S+
Sbjct: 58  LSPSGNTPNKSSTSPYPPNHPLSGSKHLCSI 88


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,873
Number of Sequences: 336
Number of extensions: 4160
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23866870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)