Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0090.Seq
         (861 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0240 - 26629218-26629323,26629412-26629490,26629656-266297...    31   1.2  
09_02_0036 + 3217163-3217584,3217752-3218322                           30   2.1  
03_05_0519 - 25131614-25134778                                         29   3.6  
02_05_0581 - 30122279-30123124                                         29   4.8  

>05_06_0240 -
           26629218-26629323,26629412-26629490,26629656-26629761,
           26629844-26629947,26630069-26630168,26630256-26630351,
           26630464-26630541,26630603-26630671,26630766-26630846,
           26630879-26630935,26631016-26631105,26631192-26631278,
           26631690-26631794,26631899-26631994,26632222-26632397,
           26632847-26633006,26633151-26633600
          Length = 679

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -3

Query: 541 AQLLGRAIGAGSSLLRQLAKGGCAARRL 458
           A L G A G G  L RQL++GGC  +RL
Sbjct: 85  ASLPGDANGRGLLLARQLSRGGCGEQRL 112


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 394 ITIHWPSFYNVV-TGKTLALPNLIALQH 474
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>03_05_0519 - 25131614-25134778
          Length = 1054

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/68 (22%), Positives = 29/68 (42%)
 Frame = -2

Query: 641 FGPNWLKNELI*QKFNANFNKILTLTICHSPFSCATVGKGDRCGLFAITPAGERGMCCKA 462
           +GP W +   I  +FN  +N+     +   P +  T+   D     +   +G+ G   K 
Sbjct: 671 YGPKWARTRTILDQFNPRWNEQYAWDV-FDPCTVLTIAVFDNVRYRSAEASGDAGKLPKD 729

Query: 461 IKLGNARV 438
            ++G  R+
Sbjct: 730 ARIGKLRI 737


>02_05_0581 - 30122279-30123124
          Length = 281

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 15/46 (32%), Positives = 18/46 (39%)
 Frame = +3

Query: 417 LQRRDWENPGVTQLNRLAAHPPFASWRNSEEPAPIALPNSCAAEWR 554
           L  R+W      +L RLA    F  W       P    +SC A WR
Sbjct: 101 LPEREWTAEEDERLRRLAKENLFRQWWKVAREMPGRSGDSCRARWR 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,237,106
Number of Sequences: 37544
Number of extensions: 514163
Number of successful extensions: 1491
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1491
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)