Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0090.Seq
         (861 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC011794-1|AAH11794.1|  462|Homo sapiens microspherule protein 1...    32   2.3  
AY336730-1|AAQ84517.1|  475|Homo sapiens MCRS2 protein.                32   2.3  
AF068007-1|AAC68599.1|  534|Homo sapiens cell cycle-regulated fa...    32   2.3  
AF015308-1|AAC52086.1|  462|Homo sapiens nucleolar protein protein.    32   2.3  
BC065189-1|AAH65189.1|  471|Homo sapiens iroquois homeobox 2 pro...    31   5.4  
AY335940-1|AAQ16546.1|  471|Homo sapiens homeodomain protein IRX...    31   5.4  
AY335939-1|AAQ16545.1|  471|Homo sapiens homeodomain protein IRX...    31   5.4  
AB188492-1|BAD37140.1|  471|Homo sapiens iroquois homeobox prote...    31   5.4  

>BC011794-1|AAH11794.1|  462|Homo sapiens microspherule protein 1
           protein.
          Length = 462

 Score = 32.3 bits (70), Expect = 2.3
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 528 PNSCAAEWRMANCKR*YFVKIRVKFLLNQLIF*PIRAEIGKI 653
           P  C ++WR++N        +R  FL+NQ +   IRAE  KI
Sbjct: 418 PVLCGSKWRLSNNSVVEIASLRFVFLINQDLIALIRAEAAKI 459


>AY336730-1|AAQ84517.1|  475|Homo sapiens MCRS2 protein.
          Length = 475

 Score = 32.3 bits (70), Expect = 2.3
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 528 PNSCAAEWRMANCKR*YFVKIRVKFLLNQLIF*PIRAEIGKI 653
           P  C ++WR++N        +R  FL+NQ +   IRAE  KI
Sbjct: 431 PVLCGSKWRLSNNSVVEIASLRFVFLINQDLIALIRAEAAKI 472


>AF068007-1|AAC68599.1|  534|Homo sapiens cell cycle-regulated
           factor p78 protein.
          Length = 534

 Score = 32.3 bits (70), Expect = 2.3
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 528 PNSCAAEWRMANCKR*YFVKIRVKFLLNQLIF*PIRAEIGKI 653
           P  C ++WR++N        +R  FL+NQ +   IRAE  KI
Sbjct: 490 PVLCGSKWRLSNNSVVEIASLRFVFLINQDLIALIRAEAAKI 531


>AF015308-1|AAC52086.1|  462|Homo sapiens nucleolar protein protein.
          Length = 462

 Score = 32.3 bits (70), Expect = 2.3
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 528 PNSCAAEWRMANCKR*YFVKIRVKFLLNQLIF*PIRAEIGKI 653
           P  C ++WR++N        +R  FL+NQ +   IRAE  KI
Sbjct: 418 PVLCGSKWRLSNNSVVEIASLRFVFLINQDLIALIRAEAAKI 459


>BC065189-1|AAH65189.1|  471|Homo sapiens iroquois homeobox 2
           protein.
          Length = 471

 Score = 31.1 bits (67), Expect = 5.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 337 SAGDPPGGARYPIRPIVSRITIHWPSFYNVVT 432
           S G PPGG+ YP  P++ R   +   FY   T
Sbjct: 362 STGAPPGGSPYPASPLLGRPLYYTSPFYGNYT 393


>AY335940-1|AAQ16546.1|  471|Homo sapiens homeodomain protein IRXA2
           protein.
          Length = 471

 Score = 31.1 bits (67), Expect = 5.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 337 SAGDPPGGARYPIRPIVSRITIHWPSFYNVVT 432
           S G PPGG+ YP  P++ R   +   FY   T
Sbjct: 362 STGAPPGGSPYPASPLLGRPLYYTSPFYGNYT 393


>AY335939-1|AAQ16545.1|  471|Homo sapiens homeodomain protein IRXA2
           protein.
          Length = 471

 Score = 31.1 bits (67), Expect = 5.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 337 SAGDPPGGARYPIRPIVSRITIHWPSFYNVVT 432
           S G PPGG+ YP  P++ R   +   FY   T
Sbjct: 362 STGAPPGGSPYPASPLLGRPLYYTSPFYGNYT 393


>AB188492-1|BAD37140.1|  471|Homo sapiens iroquois homeobox protein
           2 protein.
          Length = 471

 Score = 31.1 bits (67), Expect = 5.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 337 SAGDPPGGARYPIRPIVSRITIHWPSFYNVVT 432
           S G PPGG+ YP  P++ R   +   FY   T
Sbjct: 362 STGAPPGGSPYPASPLLGRPLYYTSPFYGNYT 393


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,679,175
Number of Sequences: 237096
Number of extensions: 2849227
Number of successful extensions: 10371
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10371
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10984231046
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)