Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0090.Seq
         (861 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AC006833-9|AAF60943.1|  318|Caenorhabditis elegans Saposin-like ...    28   7.4  

>Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical
           protein C48G7.1 protein.
          Length = 658

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +1

Query: 61  GLSLSSNPTLRSVPLAATLRRYGPGTL-YGKTAPFKTNLDR-SRRDEKAEPPEHHISR 228
           G S +S+P+ RS PLA    R   G +  G     K+N  R +  +E +  P H I R
Sbjct: 392 GSSATSSPSSRSRPLAMRRERSDIGVISNGMNLGVKSNAQRLAYHNESSPGPAHAIGR 449


>AC006833-9|AAF60943.1|  318|Caenorhabditis elegans Saposin-like
           protein family protein7 protein.
          Length = 318

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 708 WNKSPLLKERGXPTSXGEKPS 770
           WN+ P+++ER  P+  G  PS
Sbjct: 24  WNEEPVVRERASPSPNGNTPS 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,519,799
Number of Sequences: 27780
Number of extensions: 393725
Number of successful extensions: 991
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)