Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0089.Seq
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0387 + 23038490-23038662,23039246-23039303,23039471-230395...    39   0.004
06_01_0775 - 5795329-5795801,5796582-5796720,5796810-5797049,579...    30   2.0  
06_03_1501 + 30612643-30613310,30613396-30613501,30613732-306139...    29   2.6  
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69...    29   3.5  
03_01_0604 + 4449416-4449766,4450150-4450374                           29   4.6  

>11_06_0387 +
           23038490-23038662,23039246-23039303,23039471-23039551,
           23039640-23039675,23039821-23040060,23040155-23040293,
           23041417-23041889
          Length = 399

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 140 WDKSPHVQHYTHHPKEYLTALYAHLDASGLI 48
           W  SPHV HY HHP+EY  A+   L  + ++
Sbjct: 236 WQNSPHVGHYKHHPEEYRAAVTELLTKASML 266


>06_01_0775 -
           5795329-5795801,5796582-5796720,5796810-5797049,
           5797278-5797313,5797421-5797501,5797937-5797994,
           5799440-5799630
          Length = 405

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 140 WDKSPHVQHYTHHPKEYLTAL 78
           W  SPHV HY  H  EY +A+
Sbjct: 242 WSDSPHVGHYMLHEAEYRSAV 262


>06_03_1501 +
           30612643-30613310,30613396-30613501,30613732-30613934,
           30614211-30614502
          Length = 422

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = -2

Query: 263 PLCSAPALFLXSRSDPVGAEPSNRSVHDSWCSMGIKCTWKCWDKSPHVQHYTHHPKEYLT 84
           P C  P L++ S +D V    S  S  +S    G +     +  SPHV HY  +P+ Y +
Sbjct: 340 PKC--PQLYIYSSADRVIPAKSVESFVESQRRAGHEVRACDFVSSPHVDHYRSNPELYTS 397

Query: 83  AL 78
            L
Sbjct: 398 QL 399


>03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-693320,
            693391-693518,693951-694010,694113-694163,694704-694821,
            694990-695915,695916-697707,697810-697943,698029-698526
          Length = 1774

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 2/104 (1%)
 Frame = -2

Query: 431  DSAADIXEITIGVPAAVFPKNQIMQNTLRXYMEYHMKTFYTSATS--HYIRSSQXFHXPL 258
            +S   I +  +  PA+      + +N L   ME    TFY   T+      S      P 
Sbjct: 1445 ESTVVIRDDMVVNPASGVESIDMSENLLESLMEQSCGTFYMDGTTALEGFLSGSTKEEPQ 1504

Query: 257  CSAPALFLXSRSDPVGAEPSNRSVHDSWCSMGIKCTWKCWDKSP 126
            CS+P + L + S P+   P     +    S+G    W   D  P
Sbjct: 1505 CSSP-IALSTCSSPIALSPWGEHGYYQGDSVG-SSLWGVQDDDP 1546


>03_01_0604 + 4449416-4449766,4450150-4450374
          Length = 191

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = -2

Query: 431 DSAADIXEITIGVPAAVFPKNQIMQNTLRXYMEYHMKTFYTSATSHYIRSSQ 276
           DS+A +    +  P   FP NQ++    + Y +     +   A  H++ S Q
Sbjct: 111 DSSAAMKNDNLAKPNCRFPPNQVLAGQFKRYADTLSPVYSLHAAPHHLSSRQ 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,515,448
Number of Sequences: 37544
Number of extensions: 293075
Number of successful extensions: 837
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)