Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0089.Seq
         (687 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC117288-1|AAI17289.1|  317|Homo sapiens tumor necrosis factor (...    32   1.7  
BC117286-1|AAI17287.1|  317|Homo sapiens tumor necrosis factor (...    32   1.7  
BC074890-1|AAH74890.1|  317|Homo sapiens tumor necrosis factor (...    32   1.7  
BC074823-1|AAH74823.1|  317|Homo sapiens tumor necrosis factor (...    32   1.7  
AL139382-2|CAI16926.1|  317|Homo sapiens tumor necrosis factor (...    32   1.7  
AF053712-1|AAC39731.1|  317|Homo sapiens osteoprotegerin ligand ...    32   1.7  
AF019047-1|AAB86811.1|  317|Homo sapiens RANKL protein.                32   1.7  
AB064269-1|BAB79694.1|  317|Homo sapiens receptor activator of n...    32   1.7  
BC010704-1|AAH10704.1|  426|Homo sapiens SH2B1 protein protein.        31   3.8  
AK027488-1|BAB55148.1|  426|Homo sapiens protein ( Homo sapiens ...    31   3.8  
AF227968-1|AAF73913.1|  671|Homo sapiens SH2-B beta signaling pr...    31   3.8  
AB037720-1|BAA92537.1|  730|Homo sapiens KIAA1299 protein protein.     31   3.8  

>BC117288-1|AAI17289.1|  317|Homo sapiens tumor necrosis factor
           (ligand) superfamily, member 11 protein.
          Length = 317

 Score = 32.3 bits (70), Expect = 1.7
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 114 LHSPPEGVPHRPVRASRRQWTYLTA*KNSTKXCSLALY 1
           LH+PP   PH+P  ASR  +  L         CS+AL+
Sbjct: 30  LHAPPPPAPHQPPAASRSMFVALLGLGLGQVVCSVALF 67


>BC117286-1|AAI17287.1|  317|Homo sapiens tumor necrosis factor
           (ligand) superfamily, member 11 protein.
          Length = 317

 Score = 32.3 bits (70), Expect = 1.7
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 114 LHSPPEGVPHRPVRASRRQWTYLTA*KNSTKXCSLALY 1
           LH+PP   PH+P  ASR  +  L         CS+AL+
Sbjct: 30  LHAPPPPAPHQPPAASRSMFVALLGLGLGQVVCSVALF 67


>BC074890-1|AAH74890.1|  317|Homo sapiens tumor necrosis factor
           (ligand) superfamily, member 11 protein.
          Length = 317

 Score = 32.3 bits (70), Expect = 1.7
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 114 LHSPPEGVPHRPVRASRRQWTYLTA*KNSTKXCSLALY 1
           LH+PP   PH+P  ASR  +  L         CS+AL+
Sbjct: 30  LHAPPPPAPHQPPAASRSMFVALLGLGLGQVVCSVALF 67


>BC074823-1|AAH74823.1|  317|Homo sapiens tumor necrosis factor
           (ligand) superfamily, member 11 protein.
          Length = 317

 Score = 32.3 bits (70), Expect = 1.7
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 114 LHSPPEGVPHRPVRASRRQWTYLTA*KNSTKXCSLALY 1
           LH+PP   PH+P  ASR  +  L         CS+AL+
Sbjct: 30  LHAPPPPAPHQPPAASRSMFVALLGLGLGQVVCSVALF 67


>AL139382-2|CAI16926.1|  317|Homo sapiens tumor necrosis factor
           (ligand) superfamily, member 11 protein.
          Length = 317

 Score = 32.3 bits (70), Expect = 1.7
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 114 LHSPPEGVPHRPVRASRRQWTYLTA*KNSTKXCSLALY 1
           LH+PP   PH+P  ASR  +  L         CS+AL+
Sbjct: 30  LHAPPPPAPHQPPAASRSMFVALLGLGLGQVVCSVALF 67


>AF053712-1|AAC39731.1|  317|Homo sapiens osteoprotegerin ligand
           protein.
          Length = 317

 Score = 32.3 bits (70), Expect = 1.7
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 114 LHSPPEGVPHRPVRASRRQWTYLTA*KNSTKXCSLALY 1
           LH+PP   PH+P  ASR  +  L         CS+AL+
Sbjct: 30  LHAPPPPAPHQPPAASRSMFVALLGLGLGQVVCSVALF 67


>AF019047-1|AAB86811.1|  317|Homo sapiens RANKL protein.
          Length = 317

 Score = 32.3 bits (70), Expect = 1.7
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 114 LHSPPEGVPHRPVRASRRQWTYLTA*KNSTKXCSLALY 1
           LH+PP   PH+P  ASR  +  L         CS+AL+
Sbjct: 30  LHAPPPPAPHQPPAASRSMFVALLGLGLGQVVCSVALF 67


>AB064269-1|BAB79694.1|  317|Homo sapiens receptor activator of
           nuclear factor kappa B ligand 1 protein.
          Length = 317

 Score = 32.3 bits (70), Expect = 1.7
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 114 LHSPPEGVPHRPVRASRRQWTYLTA*KNSTKXCSLALY 1
           LH+PP   PH+P  ASR  +  L         CS+AL+
Sbjct: 30  LHAPPPPAPHQPPAASRSMFVALLGLGLGQVVCSVALF 67


>BC010704-1|AAH10704.1|  426|Homo sapiens SH2B1 protein protein.
          Length = 426

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +1

Query: 130 DLSQHFHVHLIPMLHQESCTLRLLGSAPTGSLREXRNSAGAEHSG 264
           D+ +HF VH IP+    S  + L+   P+   ++ R  AG+ H+G
Sbjct: 354 DMLEHFRVHPIPLESGGSSDVVLVSYVPSSQRQQGREQAGS-HAG 397


>AK027488-1|BAB55148.1|  426|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14582 fis, clone NT2RM4001411, highly similar to
           Mus musculus Pro-rich, PH, SH2 domain-containing
           signaling ).
          Length = 426

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +1

Query: 130 DLSQHFHVHLIPMLHQESCTLRLLGSAPTGSLREXRNSAGAEHSG 264
           D+ +HF VH IP+    S  + L+   P+   ++ R  AG+ H+G
Sbjct: 354 DMLEHFRVHPIPLESGGSSDVVLVSYVPSSQRQQGREQAGS-HAG 397


>AF227968-1|AAF73913.1|  671|Homo sapiens SH2-B beta signaling
           protein protein.
          Length = 671

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +1

Query: 130 DLSQHFHVHLIPMLHQESCTLRLLGSAPTGSLREXRNSAGAEHSG 264
           D+ +HF VH IP+    S  + L+   P+   ++ R  AG+ H+G
Sbjct: 599 DMLEHFRVHPIPLESGGSSDVVLVSYVPSSQRQQGREQAGS-HAG 642


>AB037720-1|BAA92537.1|  730|Homo sapiens KIAA1299 protein protein.
          Length = 730

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +1

Query: 130 DLSQHFHVHLIPMLHQESCTLRLLGSAPTGSLREXRNSAGAEHSG 264
           D+ +HF VH IP+    S  + L+   P+   ++ R  AG+ H+G
Sbjct: 658 DMLEHFRVHPIPLESGGSSDVVLVSYVPSSQRQQGREQAGS-HAG 701


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,841,231
Number of Sequences: 237096
Number of extensions: 1569067
Number of successful extensions: 6965
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6965
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)