Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0089.Seq
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical ...    28   7.2  

>Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical
           protein R10E8.6 protein.
          Length = 1696

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/66 (21%), Positives = 27/66 (40%)
 Frame = -2

Query: 320 TFYTSATSHYIRSSQXFHXPLCSAPALFLXSRSDPVGAEPSNRSVHDSWCSMGIKCTWKC 141
           T Y ++   Y +     +  + +AP        D  G E   R++  + C+  +K + K 
Sbjct: 501 TDYITSVLSYFQPGTLENIAIHTAPHTIAMELEDIAGLEQWKRAISVAMCNTTLKLSSKS 560

Query: 140 WDKSPH 123
           W+   H
Sbjct: 561 WENFKH 566


>AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical
           protein E04A4.6 protein.
          Length = 466

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 561 DTANGSIYQFWFLRSYSVTWITVVILELIHAIRTL 665
           D+  G++   WF +++SV WI +V+   I   +T+
Sbjct: 224 DSLPGNVDNNWFEQTFSVYWIPLVVASEIETNQTV 258


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,540,819
Number of Sequences: 27780
Number of extensions: 227650
Number of successful extensions: 579
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)