Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0089.Seq
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g15695.1 68415.m01797 expressed protein contains Pfam PF05705...    33   0.23 
At5g44250.1 68418.m05413 expressed protein contains Pfam PF05705...    29   2.2  
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ...    28   5.0  
At4g22510.1 68417.m03249 hypothetical protein                          27   8.8  

>At2g15695.1 68415.m01797 expressed protein contains Pfam PF05705:
           Eukaryotic protein of unknown function (DUF829)
          Length = 420

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 18/63 (28%), Positives = 26/63 (41%)
 Frame = -2

Query: 251 APALFLXSRSDPVGAEPSNRSVHDSWCSMGIKCTWKCWDKSPHVQHYTHHPKEYLTALYA 72
           AP L L S +D +       S       +G +     W  SPH  HY H+P +Y   +  
Sbjct: 211 APYLILCSENDELAPLQVISSFTHQLQELGGEVKVVKWKNSPHAGHYAHNPIQYRAVISN 270

Query: 71  HLD 63
            L+
Sbjct: 271 FLE 273


>At5g44250.1 68418.m05413 expressed protein contains Pfam PF05705:
           Eukaryotic protein of unknown function (DUF829)
          Length = 403

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = -2

Query: 248 PALFLXSRSDPVGAEPSNRSVHDSWCSMGIKCTWKCWDKSPHVQHYTHHPKEYLTALYAH 69
           P L L S +D +    +  +       +G       W+ SPH  HY ++  +Y  A+   
Sbjct: 204 PYLILCSENDDLAPYQTIHNFATRLQELGGNVKLVKWNDSPHCGHYRYNQVDYKAAVSEF 263

Query: 68  LD-ASGLISQPEKIQRRXAL 12
           L  A+ + SQ  +   R A+
Sbjct: 264 LSKAASVYSQKTRSLDREAM 283


>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 823

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = -2

Query: 491 VMNNRKMYQPVMDRIAAXVWDSAADIXEITIGV-PAAVFPKNQIMQNTLRXYMEYHMKTF 315
           V+  RK Y P ++R +   W+    I +    +  A  FP  ++M   L  +++   +T 
Sbjct: 450 VVPERKRYTPELNRPSLKDWNWEGTIAKGGNPICRAKCFPVGKVMDMMLPEFLDCTARTG 509

Query: 314 YTSATSHYIRSSQ 276
                 HY +SS+
Sbjct: 510 LDMLAKHYYQSSK 522


>At4g22510.1 68417.m03249 hypothetical protein 
          Length = 125

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 89 LTALYAHLDASGLISQPEKIQRRXA 15
          LTA +AH D  G++ +P KI++  A
Sbjct: 10 LTASHAHTDTRGVLLRPAKIEQHRA 34


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,940,405
Number of Sequences: 28952
Number of extensions: 216712
Number of successful extensions: 515
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)