Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0085.Seq
         (786 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    25   0.91 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    25   0.91 
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    25   0.91 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    25   0.91 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    25   0.91 
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    25   0.91 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           25   0.91 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    25   0.91 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   2.8  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   2.8  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 235 SSRPTKPCSLSVTEAGKPSSGTVS 164
           SS  T P S+S +  GKP++ T S
Sbjct: 140 SSGLTSPLSVSTSPPGKPATSTTS 163


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 235 SSRPTKPCSLSVTEAGKPSSGTVS 164
           SS  T P S+S +  GKP++ T S
Sbjct: 140 SSGLTSPLSVSTSPPGKPATSTAS 163


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 235 SSRPTKPCSLSVTEAGKPSSGTVS 164
           SS  T P S+S +  GKP++ T S
Sbjct: 140 SSGLTSPLSVSTSPPGKPATSTAS 163


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 235 SSRPTKPCSLSVTEAGKPSSGTVS 164
           SS  T P S+S +  GKP++ T S
Sbjct: 140 SSGLTSPLSVSTSPPGKPATSTAS 163


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 235 SSRPTKPCSLSVTEAGKPSSGTVS 164
           SS  T P S+S +  GKP++ T S
Sbjct: 140 SSGLTSPLSVSTSPPGKPATSTAS 163


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 235 SSRPTKPCSLSVTEAGKPSSGTVS 164
           SS  T P S+S +  GKP++ T S
Sbjct: 96  SSGLTSPLSVSTSPPGKPATSTAS 119


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 235 SSRPTKPCSLSVTEAGKPSSGTVS 164
           SS  T P S+S +  GKP++ T S
Sbjct: 140 SSGLTSPLSVSTSPPGKPATSTAS 163


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 235 SSRPTKPCSLSVTEAGKPSSGTVS 164
           SS  T P S+S +  GKP++ T S
Sbjct: 140 SSGLTSPLSVSTSPPGKPATSTAS 163


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 191 WKAF*WNSFPLQIFQL 144
           W +F WN  P+ +F L
Sbjct: 917 WSSFYWNLLPIAVFIL 932


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 191 WKAF*WNSFPLQIFQL 144
           W +F WN  P+ +F L
Sbjct: 917 WSSFYWNLLPIAVFIL 932


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,796
Number of Sequences: 336
Number of extensions: 2748
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21272645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)