Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0085.Seq
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    26   7.0  
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    26   7.0  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    25   9.3  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   9.3  

>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 260 PCQTVRGAFFKTYKTLQLIC 201
           P  ++RG F K Y+ L LIC
Sbjct: 422 PSPSLRGTFAKAYEMLTLIC 441


>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 204

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 138 SKKLKDLKWETVPLEGFPASVTDKLQGFVGLEECTSYGLT 257
           S+KLK+++ E +         + KL GF+  E+    GLT
Sbjct: 74  SEKLKEMEMEKLEYICIFEKTSKKLVGFLSFEDTVEAGLT 113


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 167 FPLQIFQLFTHFRKLYEYLIRTEYYP 90
           F L +F L  HF++  E   R  Y+P
Sbjct: 487 FYLMVFSLRAHFKQEIEVFFREVYFP 512


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
 Frame = +1

Query: 7   PNSARAMS--KTCLFEEVMIYLTFCV 78
           P S R +    T LF  +MIY  FCV
Sbjct: 665 PRSCRVLLFISTALFSIIMIYFVFCV 690


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,621,972
Number of Sequences: 5004
Number of extensions: 43284
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)