Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0084.Seq
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    29   0.60 
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    29   1.1  
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2...    29   1.1  
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    27   4.3  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    26   5.6  
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    26   7.4  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    25   9.8  

>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 10/35 (28%), Positives = 24/35 (68%)
 Frame = +3

Query: 237 SLDGQTHACSDFKNIYAVDEVYYVDEIKDVLKSLM 341
           +L+G  ++ SD+ ++Y VDE+   + +++ +K L+
Sbjct: 305 NLNGTYYSISDYTDVYGVDELQLFESLENCIKPLV 339


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +1

Query: 184 VSTGKSYLFVPRLPEEYEVWMGKLMPVVTSKTYMQLMKSIMLM 312
           ++TG  ++F+P  P E   W  +L   ++S   +   KSI+++
Sbjct: 400 LATGADFVFIPERPAEVGKWQDELCNSLSSVRKLGKRKSIVIV 442


>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 430 LNSSIPLKMASRAVKPLSVFGPDNVSNVSGIKLL 329
           L+SS+  K+ +  +KP+ VFGP  V   + +K L
Sbjct: 5   LSSSVASKLVTLKLKPVVVFGPSGVGKSTLLKRL 38


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +3

Query: 351 LLTLSGPNTDSGLTAREAIFNGIDEFNVDNESLFPIIAELRVIKTPEEIAVMRMYAKSHL 530
           +L +S     +G T +  I N  D+  +  E +  ++AE    K  +E    R+ AK+HL
Sbjct: 483 ILNVSALEKGTGKTQKITITN--DKGRLSKEEIDRMVAEAEKYKAEDEAESGRIQAKNHL 540


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -3

Query: 502 TAISSGVLITRNSAIMGNKDSLSTLNSSIPLKMASRAVKPLSVFGPDNVS 353
           +A+ S    T N  I+     LST  S+ P+      + PL    P NVS
Sbjct: 707 SALVSATSPTTNVPIVPEAVHLSTAFSTAPVSTIVSNISPLPTVAPPNVS 756


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 387 LTAREAIFNGIDEFNVDNESLFPIIAELRVIKTP 488
           L+  + + N  + F +DNE+L  I A    IK+P
Sbjct: 187 LSMHQLVENSDETFCIDNEALSSIFANTLKIKSP 220


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 364 LAQTQTVA*RPEKPFLMELMSSMWIMN 444
           L+Q    + R  KPFL  L  S W  N
Sbjct: 27  LSQRSKTSTRSSKPFLQRLFPSTWFKN 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,532,446
Number of Sequences: 5004
Number of extensions: 76180
Number of successful extensions: 225
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)