Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0084.Seq
(822 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0120 + 6984482-6984643,6984748-6984797,6984936-6984996,698... 97 1e-20
12_02_0786 + 23139854-23139901,23140054-23140122,23140531-231405... 39 0.004
07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,557... 30 2.6
11_01_0209 - 1642473-1642579,1642783-1642826,1642935-1643023,164... 29 3.4
09_06_0241 + 21803476-21803604,21804968-21805026,21805117-21805444 29 5.9
04_01_0619 - 8125611-8127967,8128449-8130123 29 5.9
>02_02_0120 +
6984482-6984643,6984748-6984797,6984936-6984996,
6985574-6985669,6985754-6985903,6986208-6986339,
6986641-6986768,6987285-6987327,6987935-6988018,
6989049-6989090,6989264-6989334,6989621-6989674,
6989789-6989894,6990038-6990106,6990824-6990967,
6992038-6992113,6992295-6992353
Length = 508
Score = 97.5 bits (232), Expect = 1e-20
Identities = 77/244 (31%), Positives = 115/244 (47%), Gaps = 9/244 (3%)
Frame = +1
Query: 55 IVVLQGGEDVNHYDTDVQYVFRQEAYFTWVCGVREPGCYFALDVSTGKSYLFVPRLPEEY 234
+V+LQGGE+ Y TD +FRQE+YF ++ GVREPG Y A+D+ +G+S LF PRLP +Y
Sbjct: 50 LVLLQGGEEQTRYCTDHLELFRQESYFAYLFGVREPGFYGAIDIVSGQSILFSPRLPADY 109
Query: 235 EVWMGKLMPVVTSKTYMQLMKSIMLMR*KMYSKV*CRKHC*H------CLAQTQTVA*RP 396
VWMG++ P+ + K M+ ++V + H L T +
Sbjct: 110 AVWMGEIKPL---SYFKDRYKVDMVFYVDEITQVLQDRFSDHGKPLLFVLYGKNTDSGNY 166
Query: 397 EKPFLMELMSSM-WIMNPYFPLSQNCALSKRQRKLL*CVCMQSLI*RTQTGDVVR--EXG 567
KP E M ++ P+ C + K +L + + + +V+R + G
Sbjct: 167 SKPASFEGMEKFDSDLSTLHPILTECRVIKSDMELA-LIQYANDVSSEAHIEVMRRAKPG 225
Query: 568 RMEYQCESIFLDHCYRVGRVPTCFVHLXYADXGTTPRHFHYGPRRDSLTARFIVNGDIXL 747
EYQ ESIFL H Y G C + G HYG + R + +GD+ L
Sbjct: 226 MKEYQLESIFLHHVYMYGGCRHC-SYTCICATGENSSVLHYG-HAAAPNDRTLNDGDMAL 283
Query: 748 FDIG 759
D+G
Sbjct: 284 MDMG 287
Score = 69.3 bits (162), Expect = 3e-12
Identities = 38/92 (41%), Positives = 56/92 (60%), Gaps = 4/92 (4%)
Frame = +3
Query: 246 GQTHACSDFKNIYAVDEVYYVDEIKDVLKSLMPE----TLLTLSGPNTDSGLTAREAIFN 413
G+ S FK+ Y VD V+YVDEI VL+ + L L G NTDSG ++ A F
Sbjct: 114 GEIKPLSYFKDRYKVDMVFYVDEITQVLQDRFSDHGKPLLFVLYGKNTDSGNYSKPASFE 173
Query: 414 GIDEFNVDNESLFPIIAELRVIKTPEEIAVMR 509
G+++F+ D +L PI+ E RVIK+ E+A+++
Sbjct: 174 GMEKFDSDLSTLHPILTECRVIKSDMELALIQ 205
>12_02_0786 +
23139854-23139901,23140054-23140122,23140531-23140544,
23140603-23140675,23140875-23140979,23141817-23142080,
23142159-23142251,23142381-23142587,23143155-23143258,
23143436-23143502,23143576-23143683,23143943-23144033,
23144123-23144193,23144421-23144549,23144659-23144766
Length = 516
Score = 39.1 bits (87), Expect = 0.004
Identities = 25/99 (25%), Positives = 42/99 (42%)
Frame = +1
Query: 13 FGTSRLANKLKSGQIVVLQGGEDVNHYDTDVQYVFRQEAYFTWVCGVREPGCYFALDVST 192
F +L L + ++ E D V Y FRQ + ++ G +PG L T
Sbjct: 121 FRRKKLLEVLPEKSLAIIASAEQQMMTDV-VPYSFRQNGDYLYITGCAQPGGVAVLSEET 179
Query: 193 GKSYLFVPRLPEEYEVWMGKLMPVVTSKTYMQLMKSIML 309
G +F+P +E VW G+ V ++ + + K+ L
Sbjct: 180 GLC-MFMPDTSKEDVVWQGQTAGVEAAENFFKADKAFPL 217
>07_01_0733 +
5570084-5570282,5570395-5570600,5572484-5572624,
5572773-5572949,5573049-5573145,5573575-5573687,
5573774-5573896,5574004-5574075,5575340-5575432,
5575564-5575674,5575767-5575889,5576834-5576890,
5576939-5577022,5577140-5577214,5577418-5577554,
5577719-5577853,5579029-5579168,5579334-5579399,
5579732-5579838,5579910-5579990,5580064-5580138,
5580224-5580325,5581837-5582005,5582090-5582217,
5582596-5582679,5582779-5582879,5583729-5583882,
5583964-5584038,5584112-5584262,5584463-5585078,
5585427-5585487,5585874-5586019,5586104-5586287,
5586363-5586440,5586603-5586931,5587023-5587199,
5587571-5587667,5587742-5587897,5587962-5588198,
5588271-5588354,5588426-5588486,5588762-5588898
Length = 1912
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 703 PGVARSESVAALCPDPHMXSVRNMSAP 623
PG+ S V ALCP PHM + ++ P
Sbjct: 501 PGMVFSSGVKALCPLPHMSELEHVVKP 527
>11_01_0209 -
1642473-1642579,1642783-1642826,1642935-1643023,
1643114-1643158,1643484-1643591,1643691-1643776,
1643917-1644004,1644211-1644387,1644720-1644795,
1644898-1644947,1645030-1645092,1645332-1645434,
1645513-1645615,1645731-1645791,1646268-1646308,
1646792-1646825
Length = 424
Score = 29.5 bits (63), Expect = 3.4
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -2
Query: 371 WARQCQQCFRHQTFEYIFYLINIIDFINCIYVFE 270
WA++ Q F + +F ++N+++ I I+ FE
Sbjct: 378 WAQKRQDAFFFPGDQVVFLMLNVVELIGLIFTFE 411
>09_06_0241 + 21803476-21803604,21804968-21805026,21805117-21805444
Length = 171
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 393 AREAIFNGIDEFNVDNESLFPIIAELRVIKTPE 491
A EA+ G D FN D +++ ++ ++ TPE
Sbjct: 43 AMEAVNGGADIFNEDQHAIYKLLGRIKSESTPE 75
>04_01_0619 - 8125611-8127967,8128449-8130123
Length = 1343
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +1
Query: 535 TQTGDVVREXGRMEYQCESIFLDHCYRVGRVPTCFVH 645
T +G + +E G+++ Q +++LDH + G +PT F +
Sbjct: 361 TLSGLIPQELGQLQ-QLNALYLDHNHFTGSIPTFFAN 396
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,961,498
Number of Sequences: 37544
Number of extensions: 492031
Number of successful extensions: 1015
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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