Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0084.Seq
(822 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19954| Best HMM Match : AMP_N (HMM E-Value=1.6e-32) 95 5e-20
SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_49619| Best HMM Match : C4dic_mal_tran (HMM E-Value=2) 29 4.6
SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17) 29 4.6
SB_18816| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_14141| Best HMM Match : HH_signal (HMM E-Value=0) 29 4.6
SB_16678| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_50208| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_11114| Best HMM Match : UPF0203 (HMM E-Value=9.6) 28 8.0
>SB_19954| Best HMM Match : AMP_N (HMM E-Value=1.6e-32)
Length = 198
Score = 95.5 bits (227), Expect = 5e-20
Identities = 41/75 (54%), Positives = 52/75 (69%)
Frame = +1
Query: 37 KLKSGQIVVLQGGEDVNHYDTDVQYVFRQEAYFTWVCGVREPGCYFALDVSTGKSYLFVP 216
K+ G IVVL GGE Y TD VFRQE++F W GV E C+ A++V TGKS LF+P
Sbjct: 18 KVPKGAIVVLLGGEQNTRYCTDTDVVFRQESFFHWTFGVLEADCFGAVEVDTGKSILFIP 77
Query: 217 RLPEEYEVWMGKLMP 261
+LP+EY +WMGK+ P
Sbjct: 78 KLPQEYAIWMGKIHP 92
Score = 36.3 bits (80), Expect = 0.030
Identities = 24/58 (41%), Positives = 28/58 (48%)
Frame = +3
Query: 246 GQTHACSDFKNIYAVDEVYYVDEIKDVLKSLMPETLLTLSGPNTDSGLTAREAIFNGI 419
G+ H +K Y VDEVY+V E G NTDSG T REA F+GI
Sbjct: 88 GKIHPKEHYKEKYDVDEVYFVSE----------------RGQNTDSGKTCREAAFDGI 129
>SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 407
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 303 YVDEIKDVLKSLMPETLLTLSGPNTDSGLTAREAI 407
++DE D + L P L + GP D+GLT R+ I
Sbjct: 248 FLDE--DTIFHLQPSGLFVIGGPQGDAGLTGRKII 280
>SB_49619| Best HMM Match : C4dic_mal_tran (HMM E-Value=2)
Length = 630
Score = 29.1 bits (62), Expect = 4.6
Identities = 10/39 (25%), Positives = 18/39 (46%)
Frame = -2
Query: 440 IIHIELINSIKNGFSGRQATVCVWARQCQQCFRHQTFEY 324
+ H +++ ++ F GR C+ R C +C H Y
Sbjct: 263 VSHTKVVYKVRVSFKGRVQGACLIQRSCTRCVSHTKVVY 301
>SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17)
Length = 1850
Score = 29.1 bits (62), Expect = 4.6
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +2
Query: 98 LMYNMYLDRKPILHGFVALENPVVILP*MLVQASLTSLCPDFLRSMK 238
L Y++ L+R P LEN L ML Q+ LT +C D LR++K
Sbjct: 579 LPYHVILERMPEGDLLSYLENSRRDLLLMLPQSILTGMCLDVLRAVK 625
>SB_18816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 506
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +1
Query: 37 KLKSGQIVVLQGGEDVNHYDTDVQYVFRQEAYFTWVCGVREPGCYFAL 180
+L +V++ G + TD+ Y FRQ F ++ G +EP L
Sbjct: 123 ELHDKHLVIIPGNPN-QFMSTDIPYPFRQNTDFLYLTGFQEPDAVLLL 169
>SB_14141| Best HMM Match : HH_signal (HMM E-Value=0)
Length = 754
Score = 29.1 bits (62), Expect = 4.6
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Frame = +1
Query: 559 EXGRMEYQCESIFLDHCYRVGRVPTCFVHLXYADXGTTPRHFHYGPRRDSLT-------- 714
E GR+ Y IFLD+ + +VP + A+ T H + +R+S T
Sbjct: 303 ETGRLLYSEVLIFLDYKPWLSKVPFTIIETDVANLALTRNHLIFVMKRNSSTIYDASAKL 362
Query: 715 ARFIVNGDIXL 747
A+F+ GD L
Sbjct: 363 AQFVTPGDYVL 373
>SB_16678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 298
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 43 KSGQIVVLQGGEDVNHYDTDVQYVFRQEAYFTWV 144
K IV + G+D N+++ V +FRQ WV
Sbjct: 146 KVSPIVATESGDDENNFEQFVSAIFRQHTTQLWV 179
>SB_50208| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 28.3 bits (60), Expect = 8.0
Identities = 21/73 (28%), Positives = 32/73 (43%)
Frame = +3
Query: 243 DGQTHACSDFKNIYAVDEVYYVDEIKDVLKSLMPETLLTLSGPNTDSGLTAREAIFNGID 422
DG+ A S +N Y V Y +I LTL G + DSG + +D
Sbjct: 1146 DGKARAGSLAENTYRVH--VYTGDISSA--GTNSNVFLTLYGEHGDSGEQKLDKSETHLD 1201
Query: 423 EFNVDNESLFPII 461
+F D+E +F ++
Sbjct: 1202 KFERDHEDIFSLM 1214
>SB_11114| Best HMM Match : UPF0203 (HMM E-Value=9.6)
Length = 197
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 423 HQFH*KWLLGPSSHCLCLGQTMSAMFPASNF*VHL 319
H H K PSSH +C+G T+ + VH+
Sbjct: 26 HDHHFKNATSPSSHTICVGTTLEGVSVQKYLGVHI 60
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,052,458
Number of Sequences: 59808
Number of extensions: 582191
Number of successful extensions: 1313
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1312
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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