Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0084.Seq
(822 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF043701-7|AAK18972.1| 498|Caenorhabditis elegans Hypothetical ... 75 8e-14
Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z99278-7|CAB16488.1| 382|Caenorhabditis elegans Hypothetical pr... 29 3.0
AL117195-4|CAB55010.1| 571|Caenorhabditis elegans Hypothetical ... 29 3.0
U64833-1|AAB04814.1| 857|Caenorhabditis elegans Hypothetical pr... 29 4.0
AL032646-1|CAA21676.1| 385|Caenorhabditis elegans Hypothetical ... 29 5.3
X59156-1|CAA41870.1| 77|Caenorhabditis elegans transposase pro... 28 9.3
>AF043701-7|AAK18972.1| 498|Caenorhabditis elegans Hypothetical
protein K12C11.1 protein.
Length = 498
Score = 74.5 bits (175), Expect = 8e-14
Identities = 37/78 (47%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Frame = +1
Query: 28 LANKLKSGQIVVLQGGEDVNHYDTDVQYV-FRQEAYFTWVCGVREPGCYFALDV-STGKS 201
L +K+ + +V+LQGG + N Y+TD + FRQE+YF W GV E Y A+DV S GK+
Sbjct: 28 LKSKVPANSVVLLQGGVEKNRYNTDAADLPFRQESYFFWTFGVNESEFYGAIDVRSGGKT 87
Query: 202 YLFVPRLPEEYEVWMGKL 255
LF PRL Y +W GK+
Sbjct: 88 TLFAPRLDPSYAIWDGKI 105
Score = 68.1 bits (159), Expect = 7e-12
Identities = 41/96 (42%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Frame = +3
Query: 243 DGQTHACSDFKNIYAVDEVYYVDE---IKDVLKSLMPETLLTLSGPNTDSGLTAREAIFN 413
DG+ + FK YAVDEV + D+ I + LK L + + L NTDSG E F
Sbjct: 102 DGKINNEQFFKEKYAVDEVVFNDKTTTIAEKLKELSAKHVYLLRAENTDSGDVLAEPKFA 161
Query: 414 GIDEFNVDNESLFPIIAELRVIKTPEEIAVMRMYAK 521
G +F +D E L+ +AELRV+KT +EI VMR +K
Sbjct: 162 GSGDFQLDTELLYKEMAELRVVKTEKEIGVMRYASK 197
Score = 32.7 bits (71), Expect = 0.33
Identities = 22/65 (33%), Positives = 30/65 (46%)
Frame = +1
Query: 565 GRMEYQCESIFLDHCYRVGRVPTCFVHLXYADXGTTPRHFHYGPRRDSLTARFIVNGDIX 744
G EYQ ES+F Y G + A G HYG ++ +FI +GD+
Sbjct: 213 GLYEYQLESLFRHTSYYHGGCRH-LAYTCIAATGCNGSVLHYG-HANAPNDKFIKDGDMC 270
Query: 745 LFDIG 759
LFD+G
Sbjct: 271 LFDMG 275
Score = 31.1 bits (67), Expect = 1.00
Identities = 18/67 (26%), Positives = 27/67 (40%)
Frame = +2
Query: 509 YVCKVSSDAHKQVMLYAXQVEWNTNASLYFWIIVTVLGGCRHVSYTXHMRIXAQRRDTFT 688
Y K++S+AH+ M + + F GGCRH++YT +
Sbjct: 194 YASKIASEAHRAAMKHMRPGLYEYQLESLFRHTSYYHGGCRHLAYTC-IAATGCNGSVLH 252
Query: 689 TGHAGTP 709
GHA P
Sbjct: 253 YGHANAP 259
>Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical
protein C08B11.3 protein.
Length = 1244
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -2
Query: 404 GFSGRQATVCVWARQCQQCFRHQTFEYIFYLINIIDFINCIYVFE 270
GF G +A +C W T +IF ++ + D + C+Y E
Sbjct: 395 GFEGNEAIICDWLNSA-------TIAHIFEVVGVKDIMMCVYTLE 432
>Z99278-7|CAB16488.1| 382|Caenorhabditis elegans Hypothetical
protein Y53C12B.6 protein.
Length = 382
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +3
Query: 297 VYYVDEIKDVLKSLMPETLLTLSGPNTDSGLTAREAIFNGIDEFNVDNESLFPII-AELR 473
VY+ I+ +K+ E + PN +GL +R+A F + + + P+ E+
Sbjct: 261 VYFKCNIRITVKNPSGECPVNNCSPNGSTGLISRKARDVFEHPFLLLKQKVLPVFNKEIN 320
Query: 474 VIKTPEEIAVMRMYAKSHL 530
++ T E+ + AK+H+
Sbjct: 321 ILVTSGELIIEEEQAKNHI 339
>AL117195-4|CAB55010.1| 571|Caenorhabditis elegans Hypothetical
protein Y57A10A.5 protein.
Length = 571
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/73 (27%), Positives = 39/73 (53%)
Frame = +3
Query: 300 YYVDEIKDVLKSLMPETLLTLSGPNTDSGLTAREAIFNGIDEFNVDNESLFPIIAELRVI 479
+ VD+ KD+++ L+ +LT + + GL+ ++ +N +E L PI+A+L
Sbjct: 14 FAVDQTKDIIEPLVVAKVLTEFSESENDGLSCN--VY-----YNRFHEYLAPIMAKLEEY 66
Query: 480 KTPEEIAVMRMYA 518
+ E + VM +A
Sbjct: 67 RIEERVLVMFGFA 79
>U64833-1|AAB04814.1| 857|Caenorhabditis elegans Hypothetical
protein B0507.6 protein.
Length = 857
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 423 EFNVDNESLFPIIAELRVIKTPEEIAVMRMYAKSHLTH 536
E N E F +I ELR PE++ R +K H+T+
Sbjct: 362 ENNKKTEYFFNVINELRCDLQPEDVPCYRSRSKEHITN 399
>AL032646-1|CAA21676.1| 385|Caenorhabditis elegans Hypothetical
protein Y54E2A.2 protein.
Length = 385
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -2
Query: 368 ARQCQQCFRHQTFEYIFYLINIIDFINC--IYVFEVTTGM 255
+R+ + RHQT + Y++N F++C +Y F + G+
Sbjct: 124 SREANEQSRHQTIQIDIYIVNHQIFLDCQPMYSFSIMEGL 163
>X59156-1|CAA41870.1| 77|Caenorhabditis elegans transposase
protein.
Length = 77
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = -2
Query: 365 RQCQQCFRHQTFEYIFYLINIIDFINCIYVFEV 267
R+C + F++IF+ NI +++FE+
Sbjct: 38 RRCFSAYFLNFFQFIFFFFNIFQLFYVVFLFEI 70
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,856,327
Number of Sequences: 27780
Number of extensions: 446787
Number of successful extensions: 1122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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