Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0084.Seq
         (822 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    26   0.48 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   6.0  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   6.0  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    22   6.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   7.9  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 25.8 bits (54), Expect = 0.48
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -3

Query: 706 SPGVARSESVAALCPDPHMXSVRNMSAPAQHGNNDPEI*TRIGIPFD 566
           SP  +RS S + L   PH    +  S    H N D E   ++ I  D
Sbjct: 37  SPSSSRSPSPSLLTSQPHQDHNKEKSKNNHHCNQDTEKLNQLEIESD 83


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +2

Query: 515 CKVSSDAHKQVMLYAXQVEWNTNA--SLYFWI 604
           C ++SDA KQ++  A  VE + ++  S+Y ++
Sbjct: 451 CLLASDALKQILSAAYNVELHNSSPFSIYSFL 482


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +2

Query: 515 CKVSSDAHKQVMLYAXQVEWNTNA--SLYFWI 604
           C ++SDA KQ++  A  VE + ++  S+Y ++
Sbjct: 489 CLLASDALKQILSAAYNVELHNSSPFSIYSFL 520


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +1

Query: 571 MEYQCESIFLDHCYRVGRVPTCFV 642
           M  +C+   L  C  VG  P C V
Sbjct: 32  MRRKCQECRLKKCLTVGMRPECMV 55


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +1

Query: 571 MEYQCESIFLDHCYRVGRVPTCFV 642
           M  +C+   L  C  VG  P C V
Sbjct: 235 MRRKCQECRLKKCLTVGMRPECVV 258


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,748
Number of Sequences: 438
Number of extensions: 5484
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)