Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0084.Seq
         (822 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29490.1 68417.m04208 Xaa-Pro dipeptidase, putative / prolida...   103   1e-22
At1g09300.1 68414.m01041 metallopeptidase M24 family protein sim...    30   1.6  
At1g74260.1 68414.m08600 AIR synthase-related family protein con...    29   3.7  
At4g35880.1 68417.m05095 aspartyl protease family protein contai...    28   6.5  
At4g35380.1 68417.m05026 guanine nucleotide exchange family prot...    28   6.5  

>At4g29490.1 68417.m04208 Xaa-Pro dipeptidase, putative / prolidase,
           putative / imidodipeptidase, putative similar to
           SP|P12955 Xaa-Pro dipeptidase (EC 3.4.13.9) (X-Pro
           dipeptidase) (Proline dipeptidase) (Prolidase)
           (Imidodipeptidase) {Homo sapiens}; contains Pfam
           profiles PF00557: metallopeptidase family M24, PF05195:
           Aminopeptidase P, N-terminal domain
          Length = 333

 Score =  103 bits (248), Expect = 1e-22
 Identities = 78/240 (32%), Positives = 118/240 (49%), Gaps = 6/240 (2%)
 Frame = +1

Query: 58  VVLQGGEDVNHYDTDVQYVFRQEAYFTWVCGVREPGCYFALDVSTGKSYLFVPRLPEEYE 237
           V+LQGGE+ N Y TD   +FRQE+YF ++ GVREP  Y A+D+ +GKS LF+PRLP++Y 
Sbjct: 40  VLLQGGEEKNRYCTDHTELFRQESYFAYLFGVREPDFYGAIDIGSGKSILFIPRLPDDYA 99

Query: 238 VWMGKLMPVVTSK-TYMQLMKSIMLMR*KMYSK--V*CRKHC*HCLAQTQTVA*RPEKPF 408
           VW+G++ P+   K TYM  M   +    +++++      K   + L    T +    KP 
Sbjct: 100 VWLGEIKPLSHFKETYMVDMVFYVDEIIQVFNEQFKGSGKPLLYLLHGLNTDSSNFSKPA 159

Query: 409 LMELMSSMWI-MNPYFPLSQNCALSKRQRKLL*CVCMQSLI*RTQTGDVVRE--XGRMEY 579
             E +      +    P+   C + K   +L   +   + I      +V+R+   G  EY
Sbjct: 160 SFEGIDKFETDLTTLHPILAECRVIKSSLELQ-LIQFANDISSEAHIEVMRKVTPGMKEY 218

Query: 580 QCESIFLDHCYRVGRVPTCFVHLXYADXGTTPRHFHYGPRRDSLTARFIVNGDIXLFDIG 759
           Q ES+FL H Y  G    C  +      G      HYG    +   R   +GD+ L D+G
Sbjct: 219 QMESMFLHHSYMYGGCRHC-SYTCICATGDNSAVLHYG-HAAAPNDRTFEDGDLALLDMG 276



 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 39/92 (42%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
 Frame = +3

Query: 246 GQTHACSDFKNIYAVDEVYYVDEIKDVL----KSLMPETLLTLSGPNTDSGLTAREAIFN 413
           G+    S FK  Y VD V+YVDEI  V     K      L  L G NTDS   ++ A F 
Sbjct: 103 GEIKPLSHFKETYMVDMVFYVDEIIQVFNEQFKGSGKPLLYLLHGLNTDSSNFSKPASFE 162

Query: 414 GIDEFNVDNESLFPIIAELRVIKTPEEIAVMR 509
           GID+F  D  +L PI+AE RVIK+  E+ +++
Sbjct: 163 GIDKFETDLTTLHPILAECRVIKSSLELQLIQ 194


>At1g09300.1 68414.m01041 metallopeptidase M24 family protein
           similar to SP|P15034 Xaa-Pro aminopeptidase (EC
           3.4.11.9) (X-Pro aminopeptidase) (Aminopeptidase P II)
           (Aminoacylproline aminopeptidase) {Escherichia coli};
           contains Pfam profiles PF00557: metallopeptidase family
           M24, PF05195: Aminopeptidase P, N-terminal domain
          Length = 493

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +1

Query: 103 VQYVFRQEAYFTWVCGVREPGCYFALDVSTGKSYLFVPRLPEEYEVWMGKLMPV 264
           V Y FRQ+A + ++ G ++PG    L    G   +F+P    +   W G++  V
Sbjct: 88  VPYTFRQDADYLYLTGCQQPGGVAVLSDERGLC-MFMPESTPKDIAWEGEVAGV 140


>At1g74260.1 68414.m08600 AIR synthase-related family protein contains
            Pfam profiles: PF00586 AIR synthase related protein,
            N-terminal domain, PF02769 AIR synthase related protein,
            C-terminal domain
          Length = 1387

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +3

Query: 288  VDEVYYVDEIKDVLKSLMPETLLTLSGPNTDSGL--TAREAIFNGIDEFNVD 437
            +D+V Y+  + D +++L+ E L++     +D GL  TA E  F G    N+D
Sbjct: 942  LDDVPYLKNVFDGVQALIAENLVSAGHDISDGGLVVTALEMAFAGNKGINLD 993


>At4g35880.1 68417.m05095 aspartyl protease family protein contains
           Eukaryotic and viral aspartyl proteases active site,
           PROSITE:PS00141
          Length = 524

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 76  EDVNHYDTDVQYVFRQEAYFTWVCGVREPGCYFALDVSTG 195
           EDV H  T+ +   R EAY T+ CG  + G +  +    G
Sbjct: 207 EDVMHLTTEDKNPERVEAYVTFGCGQVQSGSFLDIAAPNG 246


>At4g35380.1 68417.m05026 guanine nucleotide exchange family protein
            similar to guanine nucleotide exchange factor [Homo
            sapiens] GI:5456754; contains Pfam profile PF01369: Sec7
            domain
          Length = 1706

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 267  HYRHEFAHPDFILLRKSGHKEVR 199
            H++HEF  P  ++++KS   E+R
Sbjct: 1121 HFQHEFLRPFVVVMQKSSSAEIR 1143


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,466,507
Number of Sequences: 28952
Number of extensions: 398149
Number of successful extensions: 887
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1882599200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)