Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0079.Seq
         (814 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2...    28   1.4  
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    27   2.4  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    26   5.5  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.5  

>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 175 RVRRHTSHYERAIRVYITPTTKTIRASCCRNSQPLEILY 59
           ++R+  S Y +  RVY+TP +   RA   RN     ++Y
Sbjct: 137 KLRQILSQYGKIGRVYLTPESSAKRAQRLRNGGNKRVMY 175


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 303 LAQIPVVWRPPMLRSPCLTLSQSVSIA-LSLSFSLHFDTSVAYLRDV 440
           LAQI  VW      +PC T+ Q   +A   LS+  + +   A+ R +
Sbjct: 137 LAQILTVWPESFAITPCFTIHQGKRVATYELSYPRNANLPEAFSRSI 183


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -3

Query: 200 RKVNEPRVQSTTPHVALRESD*GLYNSNDENDSS 99
           R VN+PR   + PH+A  + D  +  S+++N+++
Sbjct: 661 RSVNDPRRVLSLPHMASADEDHRIPASDNQNNNN 694


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +3

Query: 222 CARILRYSGTGCVFYFTEIYIRW 290
           C+R+  Y      +YFT++ ++W
Sbjct: 468 CSRVRLYYNIEIAYYFTDVLLKW 490


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,613,249
Number of Sequences: 5004
Number of extensions: 43466
Number of successful extensions: 72
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)