Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0079.Seq
         (814 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0746 - 31636024-31641396                                         30   2.5  
03_01_0312 + 2469096-2470862                                           29   4.4  
05_07_0022 - 27103367-27103533,27103783-27103852,27104074-271042...    28   7.7  
03_02_0459 + 8649448-8651994                                           28   7.7  

>01_06_0746 - 31636024-31641396
          Length = 1790

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 303 LAQIP-VVWRPPMLRSPCLTLSQSVSIALSLSFSLHFD 413
           L ++P VVWR  ++R PCL L   + +ALS +  L  D
Sbjct: 682 LLELPAVVWRIRVVRWPCLLLKNELLLALSQAAELVAD 719


>03_01_0312 + 2469096-2470862
          Length = 588

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 288 WHRSSLAQIPVVWRPPMLRSPCLTLSQSVSIALSLSFSLHFDTS 419
           W+ ++   + V++R  M +  CLT   S++ A+ + F   FD +
Sbjct: 184 WYATNQFMVDVIFRNRMKQYECLTKDSSIAAAVFVPFYAGFDVA 227


>05_07_0022 -
           27103367-27103533,27103783-27103852,27104074-27104215,
           27104372-27104552,27104654-27104756
          Length = 220

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 171 TLHSRLVHFSRI*FTESCARILR 239
           TLHS++ HFS + +  SC + LR
Sbjct: 116 TLHSKVAHFSAVLYDISCGKELR 138


>03_02_0459 + 8649448-8651994
          Length = 848

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 381 ALSLSFSLHFDTSVAYLRDVTS-VKMLPSCA*RSLTSXXXXXNSGGAGTN 527
           A S S  + FD+S A L D+   VK L S   R  +S      SGGAG N
Sbjct: 167 ATSPSHGIAFDSSWALLDDLEILVKRLRSKQLRRTSSIDTINGSGGAGNN 216


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,327,282
Number of Sequences: 37544
Number of extensions: 325160
Number of successful extensions: 601
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)