Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0077.Seq
         (481 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   1.1  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    23   1.9  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           22   2.6  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   3.4  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    21   4.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   7.8  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 218 HRXHPLPVQTRHAPVLRANPYS 153
           +R HPL + + H  +L  NP S
Sbjct: 332 NRCHPLSLSSDHQAMLHHNPMS 353


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 259 SLNEHNARTSTRPGTGXIRFPSKPDTP 179
           S+N+ N     +P T     P  P+TP
Sbjct: 264 SMNDANRNDCAKPLTQIRNIPGPPETP 290


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 259 SLNEHNARTSTRPGTGXIRFPSKPDTP 179
           S+N+ N     +P T     P  P+TP
Sbjct: 264 SMNDVNRNDCAKPLTQIRNIPGPPETP 290


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 6/26 (23%), Positives = 17/26 (65%)
 Frame = +1

Query: 178 GACRVWTGSGCXRCRVWSMFVRYVRL 255
           G   +  G+GC R ++  ++++++R+
Sbjct: 744 GTLMMVLGTGCVRIKITGVWLKFLRV 769


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 292 LYIFNMTLAKIVLRFGLDPDPRSP 363
           L +  + LA +V  F  DP  R+P
Sbjct: 444 LLVSKVALASVVKDFVFDPTERTP 467


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +3

Query: 18  NSGEGCTWRCRAGSYPYPQQVS 83
           N G+G + +C      YP  +S
Sbjct: 616 NEGDGVSVQCTVSKGDYPLNIS 637


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 196 SKPDTPRSSEP 164
           SKP TP S EP
Sbjct: 227 SKPGTPPSGEP 237


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,511
Number of Sequences: 336
Number of extensions: 2324
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11247091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)