Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0077.Seq
         (481 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309...    31   0.49 
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729...    29   1.5  
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199...    29   2.6  
05_06_0098 + 25560158-25560925                                         29   2.6  
01_01_0476 + 3505799-3506479,3506639-3506897,3508427-3508550,350...    27   6.0  
05_05_0276 + 23771233-23771268,23773552-23773897,23774425-237745...    27   7.9  
02_04_0628 + 24589313-24589472,24589604-24589765,24589850-245899...    27   7.9  

>03_04_0090 +
           17228253-17228403,17229062-17229129,17229238-17230902,
           17231002-17231143,17231648-17232399
          Length = 925

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
 Frame = -3

Query: 239 TNIDQTRH------RXHPLPVQTRHAPVLRANP 159
           T IDQ  H      + H +PVQ  H+PVL+ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356


>12_01_0796 +
           7292523-7292783,7292963-7293018,7295274-7295331,
           7295777-7295843,7296461-7296516,7296638-7296691,
           7296836-7296961
          Length = 225

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 209 HPLPVQTRHAPVLRANPYSEVTDPICRLPL 120
           H L +  RH P L+A P S +    C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136


>06_01_0268 +
           1989069-1989293,1989938-1990020,1990136-1990357,
           1990434-1990621,1990711-1990835,1990988-1991039,
           1991585-1991874,1992229-1992307,1992527-1992657
          Length = 464

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 203 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 90
           +P Q + A  + A+P + V    C LP P+LF  L  L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329


>05_06_0098 + 25560158-25560925
          Length = 255

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/60 (25%), Positives = 25/60 (41%)
 Frame = -3

Query: 218 HRXHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSP 39
           HR  P P  +   P L  +P + V   I   P PT F + +      ++++   +  T P
Sbjct: 31  HRPPPPPPSSSSQPALPPSPRTVVPRTIDTTPFPTTFVQADTASFKQVVQMLTGSDTTPP 90


>01_01_0476 +
           3505799-3506479,3506639-3506897,3508427-3508550,
           3508922-3509030
          Length = 390

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +1

Query: 238 VRYVRLAS*YFNIMRPQKLYIFNMTLAKIVLRFGLDPDPR 357
           VR V+L   Y  I+  +K+Y++N T  K++ +     +P+
Sbjct: 109 VRAVKLGKDYIVIVLERKIYVYNFTDLKLLHQIETQSNPK 148


>05_05_0276 +
           23771233-23771268,23773552-23773897,23774425-23774541,
           23774712-23774810,23774949-23775016,23775107-23775181,
           23775386-23775931,23776040-23776092,23776163-23776204,
           23776314-23776458,23776541-23776651,23777496-23777921,
           23778116-23778373
          Length = 773

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -1

Query: 406 RNRHDLTARKIRGR-PENAGPDPVRNVR 326
           R +H  TA  ++   PEN GP PV + R
Sbjct: 238 RKQHKQTANSVQNTGPENVGPKPVNSPR 265


>02_04_0628 +
           24589313-24589472,24589604-24589765,24589850-24589983,
           24590108-24590275,24590481-24590562,24590734-24591512
          Length = 494

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -3

Query: 194 QTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIW 63
           + RH P++  +   EV+  +  L L    Y ++ L + +LL +W
Sbjct: 100 ELRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNELLNLW 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,992,830
Number of Sequences: 37544
Number of extensions: 292932
Number of successful extensions: 899
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)