Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0077.Seq
         (481 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81119-8|CAB03340.1|  504|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z83220-4|CAC42264.1|  617|Caenorhabditis elegans Hypothetical pr...    27   5.3  
U64833-8|AAB04820.1|  432|Caenorhabditis elegans Hypothetical pr...    27   7.0  

>Z81119-8|CAB03340.1|  504|Caenorhabditis elegans Hypothetical
           protein T10H4.10 protein.
          Length = 504

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 309 DTRENRLTFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRPPFN 449
           D    +L  R   G   +G   IF  VR    RF++ R D++  PFN
Sbjct: 200 DPEFEKLVSRLAKGFENTGFLDIFCPVRILESRFLKWRQDTIFEPFN 246


>Z83220-4|CAC42264.1|  617|Caenorhabditis elegans Hypothetical
           protein C34B7.4 protein.
          Length = 617

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 265 TNSLNEHNARTSTRPGTGXIRFPSKPDTPRSSEPI 161
           T  L++    +S+      +R PS  DTP SSEP+
Sbjct: 26  TQLLDDQQTPSSSSSKRKNLRKPSTDDTPSSSEPL 60


>U64833-8|AAB04820.1|  432|Caenorhabditis elegans Hypothetical
           protein B0507.3 protein.
          Length = 432

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -1

Query: 223 PGTGXIRFPSKPDTPRSSEPILIPKLRI 140
           P    ++  SKP TP  + P+L+P++ +
Sbjct: 324 PNPAMVQKSSKPSTPIPAPPVLVPQVEL 351


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,144,426
Number of Sequences: 27780
Number of extensions: 225043
Number of successful extensions: 638
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)