Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0076.Seq
         (860 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0240 - 26629218-26629323,26629412-26629490,26629656-266297...    31   1.2  
09_02_0036 + 3217163-3217584,3217752-3218322                           30   2.1  
04_03_1028 - 21827961-21827972,21828018-21828112,21828286-218283...    29   6.3  
01_06_0362 + 28739969-28740232,28740336-28740452,28740560-287406...    29   6.3  

>05_06_0240 -
           26629218-26629323,26629412-26629490,26629656-26629761,
           26629844-26629947,26630069-26630168,26630256-26630351,
           26630464-26630541,26630603-26630671,26630766-26630846,
           26630879-26630935,26631016-26631105,26631192-26631278,
           26631690-26631794,26631899-26631994,26632222-26632397,
           26632847-26633006,26633151-26633600
          Length = 679

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -2

Query: 535 AXLLGXAIGRASSLLRQLAKGGCAARRL 452
           A L G A GR   L RQL++GGC  +RL
Sbjct: 85  ASLPGDANGRGLLLARQLSRGGCGEQRL 112


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 388 ITIHWPSFYNVV-TGKTLALPNLIALQH 468
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>04_03_1028 -
           21827961-21827972,21828018-21828112,21828286-21828361,
           21828921-21829037,21829532-21829621,21830011-21830056,
           21831407-21831502,21831599-21832008
          Length = 313

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -2

Query: 304 AALSSNPTLRSVPLAATSVATGXAPSTGKRPRSRRTWTGVVATRKRNLPNTTSP 143
           AA +++P   +   AAT  A   +PS    PR RR       TR+ +   + SP
Sbjct: 18  AAAAADPAAAAPAAAATDPAAAGSPSPPLPPRKRRLSPTPSPTRRSSRSRSRSP 71


>01_06_0362 +
           28739969-28740232,28740336-28740452,28740560-28740660,
           28741251-28741322,28741433-28741514,28741607-28741687,
           28742548-28742589,28743009-28743047,28743278-28743343,
           28743444-28743590,28743638-28743652
          Length = 341

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +2

Query: 77  SLVAASEQEYSPALNPVVLIDNGRCGVREVPL 172
           S V  +E+ Y+P+++PV+L D  R G + V L
Sbjct: 185 SFVDKTEKRYNPSMSPVILKDKWRKGSQWVAL 216


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,793,595
Number of Sequences: 37544
Number of extensions: 471552
Number of successful extensions: 1166
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)