Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0076.Seq
         (860 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical ...    31   1.4  
U21317-4|AAA62523.1|  719|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF067219-6|AAC17030.1|  382|Caenorhabditis elegans Innexin prote...    28   9.8  

>AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical
           protein M01E10.2 protein.
          Length = 1286

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -2

Query: 286 PTLRSVPLAATSVATGXAPSTGKRPRSRRT---WTGVVATRKRNLPNTTSPVI 137
           PT+++ P    +  T    ST + PR+++T   WT    T ++  P T +P I
Sbjct: 369 PTIQTPPPTTQTPPTTQTSSTTQTPRTKQTWAPWTPPTTTTRQTPPTTQAPPI 421


>U21317-4|AAA62523.1|  719|Caenorhabditis elegans Hypothetical
           protein B0495.2 protein.
          Length = 719

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -1

Query: 293 KQPDSKERPSRRDLRRYGXGT-LYGKTAPFKTNLDRSRRDEKAEPPEHH 150
           K+ D K    +RD RR   G     K   FK   +RS RD+K     HH
Sbjct: 87  KERDKKREKDKRDDRRDVRGPDARQKDRDFKGRQERSGRDQKVHEHRHH 135


>AF067219-6|AAC17030.1|  382|Caenorhabditis elegans Innexin protein
           15 protein.
          Length = 382

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +1

Query: 325 HLRLNMTARGARYPIRPIVSRITIHWPSFYNVVTGKTLALPNLIA 459
           HL+  +  +G + PI  I + I  +W SF N +  K L L NLIA
Sbjct: 159 HLKKYIDRQGRKSPIPLIPNIIGRNWVSF-NYILTKFLFLVNLIA 202


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,173,599
Number of Sequences: 27780
Number of extensions: 359713
Number of successful extensions: 821
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)