Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0076.Seq
         (860 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11610.1 68418.m01355 exostosin family protein contains Pfam ...    29   4.0  
At5g11610.2 68418.m01356 exostosin family protein contains Pfam ...    28   7.0  

>At5g11610.1 68418.m01355 exostosin family protein contains Pfam
           domain, PF03016: Exostosin family
          Length = 546

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
 Frame = -1

Query: 323 SLPPA*GCTLKQPDSK---ERPSRRDLRRYGXGTLYGKTAPFKTN--LDRSRRDEKAEPP 159
           SLP     +L+ P+ K    RPS+R +  +  G+L+G   P   N    R  +D K    
Sbjct: 361 SLPETKVSSLQNPNGKIGGSRPSKRTILAFFAGSLHGYVRPILLNQWSSRPEQDMKIFNR 420

Query: 158 EHHIS--RYRLKQRDSVL--GYIPVRSPLLRKSWLVSFPPL 48
             H S  RY  + R  V   GY  V SP + +S L    P+
Sbjct: 421 IDHKSYIRYMKRSRFCVCAKGY-EVNSPRVVESILYGCVPV 460


>At5g11610.2 68418.m01356 exostosin family protein contains Pfam
           domain, PF03016: Exostosin family
          Length = 453

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -1

Query: 323 SLPPA*GCTLKQPDSK---ERPSRRDLRRYGXGTLYGKTAPFKTNLDRSRRDE 174
           SLP     +L+ P+ K    RPS+R +  +  G+L+G   P   N   SR ++
Sbjct: 361 SLPETKVSSLQNPNGKIGGSRPSKRTILAFFAGSLHGYVRPILLNQWSSRPEQ 413


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,618,833
Number of Sequences: 28952
Number of extensions: 352388
Number of successful extensions: 793
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)