Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0075.Seq
         (799 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q33564 Cluster: CR4 protein; n=1; Trypanosoma brucei|Re...    35   2.7  
UniRef50_UPI0000D8A037 Cluster: hypothetical protein eimer1508.t...    34   3.6  
UniRef50_A5W7C9 Cluster: Sulfatase; n=1; Pseudomonas putida F1|R...    34   4.8  
UniRef50_Q7RNE0 Cluster: Uba1 gene product-related; n=7; Plasmod...    34   4.8  
UniRef50_Q55BQ0 Cluster: Putative uncharacterized protein; n=1; ...    33   6.3  
UniRef50_Q4HJW4 Cluster: Methyl-accepting chemotaxis protein; n=...    33   8.3  
UniRef50_Q54XR0 Cluster: SAP DNA-binding domain-containing prote...    33   8.3  

>UniRef50_Q33564 Cluster: CR4 protein; n=1; Trypanosoma brucei|Rep:
           CR4 protein - Trypanosoma brucei
          Length = 146

 Score = 34.7 bits (76), Expect = 2.7
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +1

Query: 145 FFLFRLFIYLHFFPLFTSIYYSYGAF--FLFFFC 240
           FFL+ L  ++ FF LF  +++  G F  F+FFFC
Sbjct: 82  FFLYFLLCFVLFFDLFFMLFFVLGGFFVFVFFFC 115


>UniRef50_UPI0000D8A037 Cluster: hypothetical protein
           eimer1508.tmp20; n=1; Eimeria tenella|Rep: hypothetical
           protein eimer1508.tmp20 - Eimeria tenella
          Length = 638

 Score = 34.3 bits (75), Expect = 3.6
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 145 FFLFRLFIYLHFFPLFTSIYYSYGAFFLFFF 237
           FF F  F +  FF  FT I++ +  FF+FFF
Sbjct: 54  FFFFFFFFFFFFFFKFTFIFFFFIFFFIFFF 84


>UniRef50_A5W7C9 Cluster: Sulfatase; n=1; Pseudomonas putida F1|Rep:
           Sulfatase - Pseudomonas putida F1
          Length = 515

 Score = 33.9 bits (74), Expect = 4.8
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 360 LGHLPDELSFSSAQDVIG-NLSASVKRYLW*RLTAVTRAGV 241
           LGH P + SF + QDV G  L+AS+ RY W     V R G+
Sbjct: 148 LGHRPVKPSFDAEQDVRGWGLAASLWRYFWAARAPVDRDGL 188


>UniRef50_Q7RNE0 Cluster: Uba1 gene product-related; n=7;
           Plasmodium|Rep: Uba1 gene product-related - Plasmodium
           yoelii yoelii
          Length = 1176

 Score = 33.9 bits (74), Expect = 4.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 145 FFLFRLFIYLHFFPLFTSIYYSYGAFFLFFFCN 243
           FF+F  F + HFF  F  I++ +  FF +  CN
Sbjct: 20  FFIFHFFFFFHFF--FFXIFFFFFFFFFYHICN 50


>UniRef50_Q55BQ0 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 165

 Score = 33.5 bits (73), Expect = 6.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 145 FFLFRLFIYLHFFPLFTSIYYSYGAFFLFFF 237
           FF F +FI++ FF  F   ++ +  FF FFF
Sbjct: 41  FFFFFIFIFIFFFFFFFFFFFFFFFFFFFFF 71


>UniRef50_Q4HJW4 Cluster: Methyl-accepting chemotaxis protein; n=5;
           Campylobacter lari RM2100|Rep: Methyl-accepting
           chemotaxis protein - Campylobacter lari RM2100
          Length = 678

 Score = 33.1 bits (72), Expect = 8.3
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +1

Query: 52  VYILKLWCFFVFFCNSRSC*QLSIVTTNNNSFFLF 156
           + IL L CF V+F +SR    L ++ T  NSFF F
Sbjct: 315 IVILILSCFIVYFISSRLLSPLQVIQTGLNSFFDF 349


>UniRef50_Q54XR0 Cluster: SAP DNA-binding domain-containing protein;
           n=1; Dictyostelium discoideum AX4|Rep: SAP DNA-binding
           domain-containing protein - Dictyostelium discoideum AX4
          Length = 716

 Score = 33.1 bits (72), Expect = 8.3
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = +1

Query: 154 FRLFIYLHFFPLFTSIYYSYGAFFLFFF 237
           F  FIY + F LF SI  +Y   FLFFF
Sbjct: 673 FLSFIYFYLFILFYSIILNYNFLFLFFF 700


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 619,507,734
Number of Sequences: 1657284
Number of extensions: 11126207
Number of successful extensions: 25939
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 24613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25752
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 68319938570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)