Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0075.Seq
         (799 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    26   0.40 
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    23   2.8  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
 Frame = +1

Query: 52  VYILKLWCFFVFFC-----NSRSC*QLSIVTTNNNSFFLFRLFIYLHFFPLFTSIYYSYG 216
           V++L L C + FFC             + +  N +  FL  L  +         IYY Y 
Sbjct: 158 VHLLFLLCIYHFFCAFIIFTMHLLFCCAFIFFNMHLLFLLCLDYFTLHLLFLPCIYYFYS 217

Query: 217 AFFLF 231
           AF +F
Sbjct: 218 AFIIF 222



 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +2

Query: 200 YITVMVLFFCFFFVTPARVTAVNRYHKYRF 289
           Y TV +LF+C F +          Y  Y F
Sbjct: 78  YFTVHLLFYCPFIIFTVHFLLCTYYFYYAF 107


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 460 YRNWFVFIYPRIVKTLMKEGRIMSFY 383
           Y++    + PRI + +MKEG +M  Y
Sbjct: 477 YKDKLHKVAPRIKERMMKEGSMMVTY 502


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,945
Number of Sequences: 336
Number of extensions: 2914
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21687721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)