Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0075.Seq
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    28   1.8  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    26   5.4  
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha...    25   9.5  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   9.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   9.5  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -2

Query: 381  VLLLKIFLGHLPDELSFSSAQDVIGNL 301
            +LL   F   LP E++FSSA++VIG L
Sbjct: 4142 ILLTDNFKFILPYEITFSSAKEVIGQL 4168


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +3

Query: 669 LPXXSF*DREKKXPGTFXLXKNYXHMSXRFPTEYPFLNPS 788
           LP  S     K  PG   L KN+   S RFP +Y    P+
Sbjct: 120 LPYISLYIAAKSNPGKIDL-KNWNEASRRFPYDYKIFFPN 158


>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
           Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 744 MSXRFPTEYPFLNPSSNW 797
           +S  FPT+YPF  P  N+
Sbjct: 52  LSIHFPTDYPFKPPKVNF 69


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
 Frame = +1

Query: 70  WCFFVFFCNSRSC*QLSIVTT----NNNSFFLFRLFIYLHFFPLFTSIYYSYGAFFLFFF 237
           W FF FF  S  C +  I       ++N    F  F Y   F  F+ ++ S    F F  
Sbjct: 77  WFFFFFFFFSH-CRRFHIAIFIHPYDSNVVPFFCFFFYFSLFSFFSFLFTSLHFNFFFRL 135

Query: 238 CNSR 249
           C  +
Sbjct: 136 CRHK 139


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 606 LTRSPSKSPXFAESTTGSETRPTEKIRRETQ 514
           L R+P+KS   A+STT   + P +     TQ
Sbjct: 459 LRRTPAKSSEEAKSTTNDSSPPKDSSSTSTQ 489


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,592,935
Number of Sequences: 5004
Number of extensions: 48132
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)