Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0075.Seq
         (799 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0575 - 18654887-18655047,18656182-18656242,18656777-18657250     29   4.3  
06_02_0043 - 10906806-10907036,10907757-10907897                       28   7.5  

>09_04_0575 - 18654887-18655047,18656182-18656242,18656777-18657250
          Length = 231

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +2

Query: 524 RRIFSVGRVSDPVVDSAXNGLLLGDRV 604
           RR   VG V D VVD+A  G  LG+RV
Sbjct: 95  RRCGRVGHVEDVVVDAAARGRGLGERV 121


>06_02_0043 - 10906806-10907036,10907757-10907897
          Length = 123

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 612 MLLTRSPSKSPXFAESTTGSETR-PTEKIRRETQWPCIYPLDP 487
           +LL RSP   P  A +   S  R P+ ++RRE   P   PLDP
Sbjct: 2   VLLERSPLVVPEAAAAAASSPLRRPSPRVRREVPPP---PLDP 41


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,930,238
Number of Sequences: 37544
Number of extensions: 278026
Number of successful extensions: 522
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)