Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0074.Seq
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...    70   3e-13
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...    70   3e-13
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    25   6.1  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    25   6.1  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   6.1  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 69.7 bits (163), Expect = 3e-13
 Identities = 33/45 (73%), Positives = 36/45 (80%)
 Frame = +3

Query: 327 EASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSXR 461
           E SK E+K  L+ YDR+LLVADPRR EPKKFGG GARAR QKS R
Sbjct: 96  EHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score = 69.7 bits (163), Expect = 3e-13
 Identities = 33/45 (73%), Positives = 36/45 (80%)
 Frame = +3

Query: 327 EASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSXR 461
           E SK E+K  L+ YDR+LLVADPRR EPKKFGG GARAR QKS R
Sbjct: 96  EHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +3

Query: 228 PRAGSG*FAACCLPWMWFR*IVDRDSGNLV--NPFEASKKEIKDILVQYDRSLLVADP 395
           PR G G FA CC     F+ +  +D  N     P + +    K+IL++  ++L + +P
Sbjct: 239 PRLGQGAFAICC--ESVFKELTGKDLRNTKYGKPHKLTYDYAKNILMKKHKTLGITNP 294


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 321 PFEASKKEIKDILVQYDRSLLVADPRR 401
           PFEA+KK+++ +L  Y +   V  P++
Sbjct: 729 PFEATKKDVQSLLGAYGQLRSVRVPKK 755


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +2

Query: 170 LIPITRPRKSPVSLFFVTTSPCREWVIC 253
           +IPI +  KS +SL F+T SPC  + IC
Sbjct: 45  IIPIAQ--KSNISLPFLTLSPC-SFTIC 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,129,351
Number of Sequences: 5004
Number of extensions: 39067
Number of successful extensions: 92
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)