Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0074.Seq
         (583 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0152 - 1168928-1169377                                           83   1e-16
11_01_0155 - 1287003-1287452                                           83   1e-16
07_01_0511 + 3806475-3806876,3807914-3808039,3808120-3808193,380...    30   1.5  
03_06_0180 + 32175658-32178145,32178765-32178808                       29   3.6  
01_05_0005 - 16886553-16886946,16887079-16887404                       29   3.6  
08_02_0081 + 12036100-12036405                                         28   4.7  

>12_01_0152 - 1168928-1169377
          Length = 149

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 37/45 (82%), Positives = 41/45 (91%)
 Frame = +3

Query: 327 EASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSXR 461
           EASKKE+KDI  +YDR+LLVADPRRCEPKKFGG GARAR+QKS R
Sbjct: 105 EASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149


>11_01_0155 - 1287003-1287452
          Length = 149

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 37/45 (82%), Positives = 41/45 (91%)
 Frame = +3

Query: 327 EASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSXR 461
           EASKKE+KDI  +YDR+LLVADPRRCEPKKFGG GARAR+QKS R
Sbjct: 105 EASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149


>07_01_0511 +
           3806475-3806876,3807914-3808039,3808120-3808193,
           3808278-3808347,3808431-3808486,3808578-3808649,
           3808678-3808811,3808967-3809030,3809111-3809240,
           3809326-3809541,3809629-3809750,3810527-3810701,
           3810788-3810878,3811040-3811197,3811330-3811518,
           3813257-3813340,3813362-3813536,3815300-3815955,
           3816226-3816648,3816752-3816790
          Length = 1151

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -2

Query: 300 PYLLSSETTSKEGSRPQITHSRHGEVVTKNNDTGLLRGL 184
           P LLSSE      S P   H RH   +TKNN +G +R +
Sbjct: 823 PSLLSSEHHRSTESDPSAEHERHD--ITKNNLSGGMRAV 859


>03_06_0180 + 32175658-32178145,32178765-32178808
          Length = 843

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 23/49 (46%), Positives = 26/49 (53%)
 Frame = +3

Query: 132 ALQLFLVKIFKVYSFRLRGLVRVPYRYFSSLPPRAGSG*FAACCLPWMW 278
           ALQ  LV ++ V + R R  V V    FSSLP  A     AAC LPW W
Sbjct: 76  ALQTRLVGMY-VLARRFRDAVAV----FSSLPRGA-----AACALPWNW 114


>01_05_0005 - 16886553-16886946,16887079-16887404
          Length = 239

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 71  RNNFSIRYWSWNXRGC 118
           R+N S RYW W   GC
Sbjct: 90  RSNSSFRYWRWQPHGC 105


>08_02_0081 + 12036100-12036405
          Length = 101

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 308 PTVPIYYLAKPHPRKAAGRKLPTPGTG 228
           P++P Y  ++P PR+AA  + P P  G
Sbjct: 14  PSLPCYDGSRPEPRRAATARAPMPLAG 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,942,862
Number of Sequences: 37544
Number of extensions: 296916
Number of successful extensions: 650
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)