Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0073.Seq
         (851 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    31   0.009
AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical pro...    23   4.1  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 31.5 bits (68), Expect = 0.009
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 526 YQGDGPLREPSP*SSFLGSRCRKALNRNPKXSPDLELDGENRRTWREKE 672
           +Q + P   P+P S     + RK  N N   S + E+ G  R+TW+ +E
Sbjct: 66  WQANSPPSPPAP-SELPALKSRKLNNNNVVSSTNQEIRGPKRKTWKVEE 113


>AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical
           protein protein.
          Length = 148

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 427 KRIDRDRVECCSSLEQESTIKERGLQRQGRK 519
           K ID  +++C +S  +++   E+G  + GR+
Sbjct: 53  KTIDFRKIQCSNSPLRKARYTEKGTCKMGRE 83


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,361
Number of Sequences: 336
Number of extensions: 3531
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23555563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)