Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0073.Seq
         (851 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0036 + 3217163-3217584,3217752-3218322                           30   2.0  
11_06_0227 + 21475954-21476771,21477215-21479144,21479292-214794...    29   4.7  
12_01_0302 - 2286171-2286341,2286747-2286968                           29   6.2  
01_06_1709 + 39337720-39337785,39338103-39338310,39338705-39339345     29   6.2  

>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 157 ITIHWPSFYNVV-TGKTLALPNLIALQH 237
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>11_06_0227 +
           21475954-21476771,21477215-21479144,21479292-21479426,
           21480287-21480392,21480560-21480576
          Length = 1001

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 437 TEIGLSVVPVWNK-SPLLKNVDSNVKGEKPSIRAMAHYVNHHPNQ 568
           T++GL  +P+ N+   +L   D+  +  + +  A  H VN HPN+
Sbjct: 862 TDVGLGHLPLLNRVEVILHCCDATTRQVEEAEAAWRHMVNSHPNR 906


>12_01_0302 - 2286171-2286341,2286747-2286968
          Length = 130

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 583 RCRKALNRNPKXSPDLELDGENRRTWREKEXKKA 684
           R RK   R+ + +  +++ GE    WREKE  KA
Sbjct: 60  RLRKGYARDVRAAGAMKVRGEKLENWREKEKLKA 93


>01_06_1709 + 39337720-39337785,39338103-39338310,39338705-39339345
          Length = 304

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -2

Query: 289 RAIGAGLFAITPLAKGGCAARRLSWVTPGFSQSRR 185
           RA GAGL A+ P A+GG   RR +W   G   + R
Sbjct: 144 RAAGAGLQAVVPEARGG--ERRRAWRRRGLVATLR 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,689,537
Number of Sequences: 37544
Number of extensions: 418477
Number of successful extensions: 967
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)