Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0070.Seq
         (847 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CFBD1 Cluster: hypothetical protein TTHERM_0052...    36   1.7  
UniRef50_Q7RID0 Cluster: RNB-like protein, putative; n=8; Plasmo...    33   6.8  
UniRef50_Q22BP7 Cluster: Putative uncharacterized protein; n=1; ...    33   9.0  

>UniRef50_UPI00006CFBD1 Cluster: hypothetical protein TTHERM_00529520;
            n=1; Tetrahymena thermophila SB210|Rep: hypothetical
            protein TTHERM_00529520 - Tetrahymena thermophila SB210
          Length = 1337

 Score = 35.5 bits (78), Expect = 1.7
 Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
 Frame = +2

Query: 104  VHEFVIF*ESTNIIMVIIYSGVTTASVIL-IST--SLGSGA*RR*INSKISLLI--VVRF 268
            ++  V+  E+T  I V+ YS V  A  +L I T   L +    + ++ + S+LI  + R+
Sbjct: 887  INNMVLCKENTQKIYVMKYSIVEHAGKVLHIITIRDLSNEIFEQILDRQSSVLIDELYRY 946

Query: 269  SEITNASEI*QPSIS--KKVLVQILVKKYSNVLSSAYL*LSI-KYISSNLFTVNSMFNLK 439
               T  S+I   S+   K +  QI +  Y   +S   L L + KY+ S++F + S+ +  
Sbjct: 947  LNFTEISQILGKSLKQIKSLKYQIQINDYKQFISPLKLNLKLYKYLMSDIFDIRSLQHRS 1006

Query: 440  KALKKNY 460
              L K+Y
Sbjct: 1007 FVLNKDY 1013


>UniRef50_Q7RID0 Cluster: RNB-like protein, putative; n=8; Plasmodium
            (Vinckeia)|Rep: RNB-like protein, putative - Plasmodium
            yoelii yoelii
          Length = 2804

 Score = 33.5 bits (73), Expect = 6.8
 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 428  FNLKKALKKNYTK*NKVHNINYVSVTFFQYSKRTQL-IECICNID 559
            FNLKKAL+  Y K  K  N NY+++   +  KR  L  EC+  ID
Sbjct: 1489 FNLKKALEDQYLKDLKNKN-NYINIITDELKKRMDLRKECVFTID 1532


>UniRef50_Q22BP7 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 2647

 Score = 33.1 bits (72), Expect = 9.0
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -2

Query: 561  PSILQIHSI-NCVLFEY*KKVTET*LMLCTLFYLVXXXXXXXXKLNIELTVNRLLEMYFI 385
            PS+L +H + NCV   Y KK       L   FYL          + IE+T N+ L+   +
Sbjct: 884  PSVLNVHQVLNCVQIVYVKKQMNNPPELDYYFYLTAIVPMGYTSIMIEVTWNKKLQNNVL 943

Query: 384  ESY 376
            E +
Sbjct: 944  EKF 946


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 742,330,848
Number of Sequences: 1657284
Number of extensions: 14243315
Number of successful extensions: 26202
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26175
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 74193458591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)