Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0070.Seq
         (847 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0678 - 5534879-5534883,5535430-5535529,5535638-5535799,553...    30   2.7  
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975...    28   8.1  

>11_01_0678 -
           5534879-5534883,5535430-5535529,5535638-5535799,
           5536000-5536966,5537444-5537561,5538682-5538871,
           5538952-5539107,5539296-5540315
          Length = 905

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 26/103 (25%), Positives = 44/103 (42%)
 Frame = +1

Query: 70  NKFSHKQVNVLCS*ICDLLRINKHNNGNNIQRSDHGFCYINQHITRFGCLATIN***NIS 249
           N F    + V+ + IC +  +  HN        D G   ++QH+T+      +       
Sbjct: 144 NPFQCVMMWVMYALICQVQVLKIHNFNERYIEIDGGMPLVSQHLTKIELSGIVL------ 197

Query: 250 SHRGSF**NNKCFRNLAAFHF*ESTCTNSSKKIFKCSLKCLLI 378
             +  F   + C   L   +F ++ C +S KKIF  S++CL I
Sbjct: 198 --KDCFLNFSSC-PALKELYFTKNCCFDSVKKIFSQSMQCLRI 237


>09_06_0198 - 21496692-21496991,21497111-21497258,21497341-21497578,
            21497679-21497889,21497977-21498170,21498263-21498364,
            21498525-21499879,21501193-21501494,21501600-21501750,
            21501838-21502102,21502155-21502362,21502467-21502660,
            21502749-21502850,21503481-21503680,21504010-21504846,
            21505806-21506107,21506209-21506359,21506447-21506684,
            21506764-21506971,21507078-21507271,21507322-21507462,
            21513484-21514811,21515923-21516227,21516331-21516481,
            21516570-21516807,21516881-21517088,21517197-21517366,
            21517451-21517549,21517708-21519029,21521601-21521683
          Length = 3314

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 298  LNF*SICYFTKTNHDEKRYFTINLSSLSTRT 206
            +N   I YF+  ++DEKRY T ++S  S  T
Sbjct: 1961 VNSSDIFYFSVVDNDEKRYITFSVSEGSPHT 1991


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,627,796
Number of Sequences: 37544
Number of extensions: 339765
Number of successful extensions: 477
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)