Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0070.Seq
         (847 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81533-4|CAB04338.1|  280|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U21310-4|AAA62518.1|  165|Caenorhabditis elegans Hypothetical pr...    30   2.4  

>Z81533-4|CAB04338.1|  280|Caenorhabditis elegans Hypothetical
           protein F36G9.7 protein.
          Length = 280

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +3

Query: 237 VKYLFSSWFVLVK*QMLQKFSSLPFLRKYLYKF**KNIQMFSQVPTYSF 383
           + +LFSS F L+     Q FS +PF  + +Y    K  Q FS  P Y +
Sbjct: 199 IHHLFSSIFNLIV-NFCQLFSPIPFSNEAIYYVLNKPFQHFSSFPYYEY 246


>U21310-4|AAA62518.1|  165|Caenorhabditis elegans Hypothetical
           protein F40H6.1 protein.
          Length = 165

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 553 IANTFNQLCSFRVLKEGNRNVINVMYFILLGVIFFQG 443
           I  T     SF + K+ N ++ + M+F L+G +FF G
Sbjct: 113 IGTTILATISFAIAKDSNMSMGSSMWFCLVGGVFFNG 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,599,220
Number of Sequences: 27780
Number of extensions: 357115
Number of successful extensions: 677
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)