Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0070.Seq
         (847 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    24   2.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   2.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   2.0  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   2.7  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   6.2  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   8.2  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 210 RVLSDDKLIVKYLFSSWFVL 269
           +V+ D KLI K+   +WF L
Sbjct: 152 QVILDPKLIAKHYLRTWFFL 171


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 210 RVLSDDKLIVKYLFSSWFVL 269
           +V+ D KLI K+   +WF L
Sbjct: 152 QVILDPKLIAKHYLRTWFFL 171


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 210 RVLSDDKLIVKYLFSSWFVL 269
           +V+ D KLI K+   +WF L
Sbjct: 152 QVILDPKLIAKHYLRTWFFL 171


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 363 ERTFEYFFTRICTST 319
           +RTF  FFTR+ T T
Sbjct: 242 DRTFAPFFTRVVTDT 256


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 642 LLRQRTRPLNPRYHGSI 592
           L+    R +NPRY+GS+
Sbjct: 381 LIEGTGRSVNPRYYGSL 397


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 491 YVSVTFFQYSKRTQLIECICNIDGK 565
           YVS+   +   RT  + C C++ GK
Sbjct: 26  YVSLGALKMHIRTHTLPCKCHLCGK 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,541
Number of Sequences: 438
Number of extensions: 4862
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)