Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0070.Seq
         (847 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32990.1 68415.m04043 glycosyl hydrolase family 9 protein sim...    29   3.9  
At4g01450.3 68417.m00186 nodulin MtN21 family protein similar to...    28   6.8  
At4g01450.2 68417.m00188 nodulin MtN21 family protein similar to...    28   6.8  
At4g01450.1 68417.m00187 nodulin MtN21 family protein similar to...    28   6.8  
At3g43280.1 68416.m04568 hypothetical protein predicted protein,...    28   6.8  
At5g43100.1 68418.m05261 aspartyl protease family protein low si...    28   9.0  

>At2g32990.1 68415.m04043 glycosyl hydrolase family 9 protein
           similar to endo-beta-1,4-glucanase GI:4972236 from
           [Fragaria x ananassa]
          Length = 525

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 112 ICDLLRINKHNNGNNIQRSDHGFCYINQ 195
           +C +L  NK+ NG N+QR+  G  Y+ Q
Sbjct: 328 LCSIL--NKNINGTNVQRTPAGLLYVRQ 353


>At4g01450.3 68417.m00186 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 245

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 505 GNRNVINVMYFILLGVIFFQGFF*IEHRINCK 410
           G+ N I   +F+L GV+ F  +  I+ +IN K
Sbjct: 173 GHENWIKGCFFLLTGVVLFSSWMLIQAKINVK 204


>At4g01450.2 68417.m00188 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 361

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 505 GNRNVINVMYFILLGVIFFQGFF*IEHRINCK 410
           G+ N I   +F+L GV+ F  +  I+ +IN K
Sbjct: 173 GHENWIKGCFFLLTGVVLFSSWMLIQAKINVK 204


>At4g01450.1 68417.m00187 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 343

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 505 GNRNVINVMYFILLGVIFFQGFF*IEHRINCK 410
           G+ N I   +F+L GV+ F  +  I+ +IN K
Sbjct: 173 GHENWIKGCFFLLTGVVLFSSWMLIQAKINVK 204


>At3g43280.1 68416.m04568 hypothetical protein predicted protein,
           Arabidopsis thaliana
          Length = 157

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = -2

Query: 654 YTSILLRQRTRPLNPRYHGSILFSYNTYIFFPSILQIHSINCVL 523
           +  I+L  + RP +  +  ++L+ + T +  P+I   H + C+L
Sbjct: 18  FNGIVLISKRRPCDAAHASTLLYEHITSLNLPTITLTHLVPCLL 61


>At5g43100.1 68418.m05261 aspartyl protease family protein low
           similarity to CND41, chloroplast nucleoid DNA binding
           protein [Nicotiana tabacum] GI:2541876; contains Pfam
           profile PF00026: Eukaryotic aspartyl protease
          Length = 631

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = -2

Query: 684 PKESPYF*YYYTSILLRQRTRPLNPRY----HGSILFSYNTYIFFP 559
           P  SPY+      + +  ++  LNP+     HG++L S  TY +FP
Sbjct: 254 PFRSPYYNIDLKQMHVAGKSLKLNPKVFNGKHGTVLDSGTTYAYFP 299


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,051,176
Number of Sequences: 28952
Number of extensions: 308575
Number of successful extensions: 459
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)