Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0069.Seq
         (830 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ...    27   2.5  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    27   3.3  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   5.7  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   7.5  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    26   7.5  
SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces...    25   10.0 
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    25   10.0 

>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 291 LNFNQFEKKSIKHILKHAYLTSLFLTSYKFGN 196
           L  + F++ S+KH+++H +LTS      K GN
Sbjct: 253 LRSDPFKRYSVKHVVQHPWLTSSTPFRTKNGN 284


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -2

Query: 535 LQFAIRHSGRNCWEGRSVRASSLLRQLAKGGCAARRLSWVTPGFSQS 395
           L+ A+   G+N W     R SSLL +     C AR   W+ P   ++
Sbjct: 17  LKAAVSKYGKNQW----ARISSLLVRKTPKQCKARWYEWIDPSIKKT 59


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
 Frame = +1

Query: 337 PIRPIVSRITIHWPSFYNVVTGKTLALPNLIALQ-----HIPLSPAGVIAKRPAPIALPN 501
           P  P+ S ++ H   +    +    +L N I+L      ++PLSP    A+ P+PI L +
Sbjct: 172 PRPPLPSSVSSHSSPYSTTSSTSLYSLYNDISLSCSPEPYLPLSPTRSPARTPSPIRLYS 231

Query: 502 S 504
           S
Sbjct: 232 S 232


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 572 VKSAHFLTNRPKSAKSLINQKNRP 643
           VK   FLTN   +  SL+ Q NRP
Sbjct: 675 VKDYDFLTNLNATTLSLLTQSNRP 698


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 487 IALPNSCDLNGEWQIVSVNI 546
           + L +S D+NG W++ S NI
Sbjct: 445 LQLQSSTDINGSWRLASPNI 464


>SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 143

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 181 RTVPRITEFIRCQEKGCQICVFE 249
           R  P+  E + C + GC ICV++
Sbjct: 53  RVPPKPEEPLNCCQSGCAICVWD 75


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 109 SGQLHSVNFVSRCARIVK-FHSHQFFITRLKKY 14
           +G+L +   +    R VK FH+HQ+F    KKY
Sbjct: 132 TGKLLTELHLRETVRDVKWFHNHQYFAVAQKKY 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,320,797
Number of Sequences: 5004
Number of extensions: 68665
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)