Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0068.Seq
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    30   0.37 
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    29   0.86 
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    27   3.5  
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    27   3.5  

>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +3

Query: 426 VKSAHFLTNRPKSAKSLINQKNRPR*GWCCSSLEQESTIK-ERGLQRQRAKNRLFRAMAH 602
           VK   FLTN   +  SL+ Q NRP      S +E   TI+  R + + R    LF  + +
Sbjct: 675 VKDYDFLTNLNATTLSLLTQSNRPS-TLFSSDIEYTPTIQLNRQVLKTRRTYNLFSDLGY 733

Query: 603 YVNH 614
            + H
Sbjct: 734 LLQH 737


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 630 FWGRGAVKH*IGTLKGAPDL 689
           +WGR   +H +G L+G P+L
Sbjct: 227 YWGRAIARHFVGQLRGGPNL 246


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 505 VGVVPVWNKSPLLKNVDSNVKGRKTVYSGRWPTT*TITLIKFFGVE 642
           +G   +W  SP+ KN++ ++ G    Y G W T    +L + FG E
Sbjct: 76  MGFNAIWI-SPIDKNIEGDIDGAGYAYHGYWNTD-YESLNEHFGTE 119


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = +3

Query: 516 SSLEQESTIKERGLQRQRAKNRLFRAMAHYVNHHPNQVFWGRGAV 650
           +S+    T+ E+  QR+  +N+LFR    YVN + +Q FWG+  V
Sbjct: 441 NSIHDALTMPEK--QREANENKLFR----YVNKYTSQ-FWGQSFV 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,231,312
Number of Sequences: 5004
Number of extensions: 63169
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)