Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0068.Seq
         (868 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51269-1|AAC51202.1|  962|Homo sapiens armadillo repeat protein ...    31   5.4  
BC036893-1|AAH36893.1|  377|Homo sapiens ARVCF protein protein.        31   5.4  
U66146-1|AAC51165.1|  592|Homo sapiens CD6e protein.                   31   7.2  
L78838-2|AAL40085.1|  592|Homo sapiens T cell surface glycoprote...    31   7.2  
AC004973-1|AAC62432.1|  391|Homo sapiens WUGSC:H_DJ1139I01.1 pro...    30   9.5  

>U51269-1|AAC51202.1|  962|Homo sapiens armadillo repeat protein
           protein.
          Length = 962

 Score = 31.1 bits (67), Expect = 5.4
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = -2

Query: 819 PGXGXFTXQGDRXKLPXAXGPGPXRXSSLP 730
           PG G FT  G R   P    PGP    SLP
Sbjct: 222 PGDGCFTLPGHREAFPVGPEPGPPGGRSLP 251


>BC036893-1|AAH36893.1|  377|Homo sapiens ARVCF protein protein.
          Length = 377

 Score = 31.1 bits (67), Expect = 5.4
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = -2

Query: 819 PGXGXFTXQGDRXKLPXAXGPGPXRXSSLP 730
           PG G FT  G R   P    PGP    SLP
Sbjct: 222 PGDGCFTLPGHREAFPVGPEPGPPGGRSLP 251


>U66146-1|AAC51165.1|  592|Homo sapiens CD6e protein.
          Length = 592

 Score = 30.7 bits (66), Expect = 7.2
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +1

Query: 226 LAVVLQRRDWKTLALPNLIALQHIPLS-PAGVIAKRPAPIALPNSCAPEWRMAN 384
           +A +L R   K  ALP ++  QH+P + PAG  + +P PI +P   +   R+ +
Sbjct: 419 IAFILLRIKGK-YALPVMVNHQHLPTTIPAGSNSYQPVPITIPKEDSQRHRVTD 471


>L78838-2|AAL40085.1|  592|Homo sapiens T cell surface glycoprotein
           CD6 isoform e protein.
          Length = 592

 Score = 30.7 bits (66), Expect = 7.2
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +1

Query: 226 LAVVLQRRDWKTLALPNLIALQHIPLS-PAGVIAKRPAPIALPNSCAPEWRMAN 384
           +A +L R   K  ALP ++  QH+P + PAG  + +P PI +P   +   R+ +
Sbjct: 419 IAFILLRIKGK-YALPVMVNHQHLPTTIPAGSNSYQPVPITIPKEDSQRHRVTD 471


>AC004973-1|AAC62432.1|  391|Homo sapiens WUGSC:H_DJ1139I01.1
           protein.
          Length = 391

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +2

Query: 554 TPTSKGEKPSIQGDG-PLREPSP*SSFLGSRCRKALNRNPKGSPRFRA*PGK-SRRTWRX 727
           +P S      + G   P R P+P  +  G+R  +    +P+  PR    PG+ S  TWR 
Sbjct: 108 SPLSSETTQGVDGASRPSRGPAPCRAGPGARHLRPWPESPRPEPRGLPGPGRGSMATWRR 167

Query: 728 KGR 736
            GR
Sbjct: 168 DGR 170


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,861,562
Number of Sequences: 237096
Number of extensions: 2840985
Number of successful extensions: 4447
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4447
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 11095746082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)