Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0068.Seq
         (868 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g12890.1 68418.m01479 UDP-glucoronosyl/UDP-glucosyl transfera...    28   9.3  
At3g52910.1 68416.m05831 expressed protein nearly identical to t...    28   9.3  
At2g35050.1 68415.m04300 protein kinase family protein contains ...    28   9.3  
At2g33990.1 68415.m04162 calmodulin-binding family protein simil...    28   9.3  

>At5g12890.1 68418.m01479 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 488

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 502 RVGVVPVWNKSPLLKNVDSNVKGRKT 579
           R+  VPVW   P+LK+ D  V  R T
Sbjct: 244 RITGVPVWPVGPVLKSPDKKVGSRST 269


>At3g52910.1 68416.m05831 expressed protein nearly identical to
           transcription activator GRL4 [Arabidopsis thaliana]
           GI:21539886 (unpublished)
          Length = 548

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 516 SSLEQESTIK-ERGLQRQRAKNRLFRAMAHYVNHHPNQVFWGRGAV 650
           +S+ QE  +  ++ L  Q   + L   + H   HH    +WGRGA+
Sbjct: 105 ASVPQELLLPIKKSLLHQSPMHFLHHPLQHSFPHHQPSWYWGRGAM 150


>At2g35050.1 68415.m04300 protein kinase family protein contains Pfam
            profile: PF00069 Eukaryotic protein kinase domain
          Length = 1257

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +1

Query: 253  WKTLALPNLIALQHIPLSPAGVIAKRPAPIALPNSCAPEWRM 378
            W+ L      A  H      G++     P  +PN C PEWRM
Sbjct: 1173 WEILTGEEPYANMHYGAIIGGIVNNTLRP-TVPNYCDPEWRM 1213


>At2g33990.1 68415.m04162 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 249

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 525 EQESTIKERGLQRQRAKNRLFRAMAHYVNHHPNQVFWG 638
           E +  I ER LQR+ A  +  RA+A+  +H      WG
Sbjct: 145 ETKDEILERILQREEATIKRERALAYAFSHQLGNTNWG 182


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,352,904
Number of Sequences: 28952
Number of extensions: 351806
Number of successful extensions: 620
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2028915200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)