Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0067.Seq
         (825 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae Q0...    42   1e-04
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    28   1.8  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   2.4  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   7.5  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    26   7.5  
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ...    25   9.9  

>SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae
           Q0130|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 74

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 19/30 (63%), Positives = 24/30 (80%)
 Frame = +2

Query: 332 FGSLIIGYARNPSLKQQLFSYAILGFALSE 421
           F +LI G +RNPS++  LFS AILGFAL+E
Sbjct: 28  FSNLISGTSRNPSVRPHLFSMAILGFALTE 57


>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 343

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -1

Query: 609 NTHQSLHHYEGEVSKHSIPWLSTP 538
           NT Q    Y G    HS PW S+P
Sbjct: 151 NTEQEKMGYRGGYQMHSTPWASSP 174


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 26/114 (22%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
 Frame = +3

Query: 399  FWVSPCLRLWVCSVL*WRSCCSSLSKLFTFKNTTTAIYI*GFSVYYLE---WTAMESNVW 569
            FW+S  +    C+ +    CC +L+K+ + ++T  ++ +  F + ++    +    + V 
Sbjct: 684  FWMSNEVTSVNCTGIVLSFCCDNLAKIGSGQSTRVSVLLRLFKLAFMTVNVFPEKNAEVL 743

Query: 570  KPHPHSDARTDVCYTTVRVN-RNAIYLIM*YKQKICN---KMLYVNIMLMLQLI 719
            +PH      T +  TT  V   N +YL+    + I       LY  I+ +LQ++
Sbjct: 744  RPHISYIISTSLELTTDAVEPLNYVYLMKALFRNISGGKFDSLYKEILPLLQVM 797


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +2

Query: 80  NAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTC 193
           + VC    R C ++ +   L   + +C  +    DGTC
Sbjct: 417 SGVCTSASRQCKKLTNFSSLSCHSDSCKVSCQNEDGTC 454


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 770 LMLNMILIITIYQSQIGN*LQHQHNVYVQH 681
           L+L +   IT Y S +   L  Q N+YV+H
Sbjct: 50  LLLKLTKAITEYLSNLKPQLSKQENIYVKH 79


>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 180

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +1

Query: 154 HLQQYPPIHRWYLLSLHSSLQC 219
           HL  Y P   WYL SLH    C
Sbjct: 63  HLTIYEPQLTWYLSSLHRITGC 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,350,185
Number of Sequences: 5004
Number of extensions: 68090
Number of successful extensions: 178
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)