Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0067.Seq
         (825 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase su...    62   5e-10
D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase su...    62   5e-10
AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical...    62   5e-10
U58756-7|AAY44004.1|  220|Caenorhabditis elegans Hypothetical pr...    32   0.43 
BX677430-1|CAI79176.1|  340|Caenorhabditis elegans Hypothetical ...    31   1.0  
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr...    29   5.3  
U00065-2|AAL27237.1|  672|Caenorhabditis elegans Prion-like-(q/n...    29   5.3  
AC006632-1|AAK85466.1|  311|Caenorhabditis elegans Hypothetical ...    29   5.3  
U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z81104-7|CAB70253.2|  647|Caenorhabditis elegans Hypothetical pr...    28   9.3  
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr...    28   9.3  

>D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 28/30 (93%), Positives = 30/30 (100%)
 Frame = +2

Query: 332 FGSLIIGYARNPSLKQQLFSYAILGFALSE 421
           FG+L+IGYARNPSLKQQLFSYAILGFALSE
Sbjct: 46  FGALVIGYARNPSLKQQLFSYAILGFALSE 75


>D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 28/30 (93%), Positives = 30/30 (100%)
 Frame = +2

Query: 332 FGSLIIGYARNPSLKQQLFSYAILGFALSE 421
           FG+L+IGYARNPSLKQQLFSYAILGFALSE
Sbjct: 46  FGALVIGYARNPSLKQQLFSYAILGFALSE 75


>AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.3 protein.
          Length = 116

 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 28/30 (93%), Positives = 30/30 (100%)
 Frame = +2

Query: 332 FGSLIIGYARNPSLKQQLFSYAILGFALSE 421
           FG+L+IGYARNPSLKQQLFSYAILGFALSE
Sbjct: 70  FGALVIGYARNPSLKQQLFSYAILGFALSE 99


>U58756-7|AAY44004.1|  220|Caenorhabditis elegans Hypothetical
           protein F58F9.10 protein.
          Length = 220

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 193 LSLHSSLQCGPSRPHRSLRTLLCCQIHWCWCSDSGSS 303
           L ++S++QCGP    +S     CC ++  W   SG S
Sbjct: 104 LLINSTMQCGPIPKDKSSSNTPCCPVNGIWSDRSGFS 140


>BX677430-1|CAI79176.1|  340|Caenorhabditis elegans Hypothetical
           protein VB0395L.1 protein.
          Length = 340

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = -3

Query: 733 KVRLEINCSINIMFTYNILLQIFCLYYIIK*IAFLLTRTVV*HTSVLASL 584
           K+R    C++  + T+ +L  I C+ Y+      LL +TV+   +V +++
Sbjct: 5   KIRHRFECNLRFLLTWLVLSAIACIIYVFVVFGSLLNKTVLPSNNVPSTI 54


>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
           protein E01G6.1 protein.
          Length = 1391

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +2

Query: 140 CTGATTCSSTHPYTDGTCCPYTALCSAVLP 229
           C+    C +     D  CCPY + C A  P
Sbjct: 189 CSATKPCPNGFSCNDKKCCPYASACPAGAP 218


>U00065-2|AAL27237.1|  672|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 25
           protein.
          Length = 672

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = +2

Query: 80  NAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYT 205
           N  C     P       +  C+  T C+S +   +G CCP T
Sbjct: 106 NTQCGSNSSPQVSASGQVVTCSTNTQCASGYTCNNGACCPNT 147


>AC006632-1|AAK85466.1|  311|Caenorhabditis elegans Hypothetical
           protein F28A10.1 protein.
          Length = 311

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -1

Query: 465 KSSRNAIIRQNRPIASDKAKPRMAYENNCCLREGFLA*PMMRE 337
           KSSR  I  ++  I     KP    E N C+ + FLA PM  E
Sbjct: 21  KSSRTLIQPKSSKIQLKSFKPTFFEEWNSCVAQKFLAIPMTAE 63


>U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical
           protein T23H2.3 protein.
          Length = 1009

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
 Frame = -3

Query: 499 VVFLKVNSLESEEQQERHHKT---EQTHSLRQGETQNGV*EQLLLEGGVPGIADD----- 344
           V+    +S E E+++ERH  +   ++T S+R   T +    + +++  +  +A       
Sbjct: 9   VIIDSSDSSEDEDRKERHSSSSEVDETASMRS--TDSSEPPRTIIDASLNSMASTVYTST 66

Query: 343 -EGAEDCSNTSSGTSYSHCRCTSTNEFGSR 257
               +  S T S T+Y   +C++ + + SR
Sbjct: 67  PNSKQSISRTGSSTTYGSSKCSTDDHYRSR 96


>Z81104-7|CAB70253.2|  647|Caenorhabditis elegans Hypothetical
           protein M199.3 protein.
          Length = 647

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +1

Query: 178 HRWYLLSLHSSLQCGPSRPHRSLRTLLCCQIHWCWCSDSGSSWF 309
           +R YLL +H       +  HR  +    CQ+ W       SS F
Sbjct: 196 NRDYLLRVHGKRTTAENPKHRGFQNAKFCQVGWYQMESKNSSKF 239


>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical
           protein F30H5.3 protein.
          Length = 1599

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = +2

Query: 119 VCHLLQLCTGATTCSSTHPYTD--GTCCPYTALCSAVLPDHIGH*GHYSAAKF 271
           VC   Q+C G   C+S +  +     CCP  A   ++ P         +AA+F
Sbjct: 743 VCSTTQVCPGTHECTSVNSGSSVVNRCCPTRAYICSLPPQQGSSCSSSAAARF 795


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,039,752
Number of Sequences: 27780
Number of extensions: 416629
Number of successful extensions: 1364
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1363
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)