Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0067.Seq
         (825 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.28 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.64 
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.9  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.9  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.9  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.9  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.9  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.9  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   7.9  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   7.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.6 bits (56), Expect = 0.28
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = -3

Query: 472 ESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTS 302
           + ++QQ+R  + ++   LR  E +  V E     GG        G+ D S  ++ T+
Sbjct: 165 QQQQQQQRQQQRQEERRLRPDEIKVEVGEDEFANGGAARDESKAGSTDASTPATVTT 221


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.64
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 96  WRQTAFCFYKVRRATTKNTEKEETGL 19
           W Q  FC+++   AT KN  +    L
Sbjct: 533 WFQNTFCYFRRNAATWKNAVRHNLSL 558



 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/28 (32%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -3

Query: 493 FLKVNSLESEEQQERHHK-TEQTHSLRQ 413
           F++ +SL  ++QQ++HH+ +   H+  Q
Sbjct: 91  FMQQHSLYLQQQQQQHHQDSSSEHASNQ 118


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 43  VLCCRAPHLI 72
           V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 43  VLCCRAPHLI 72
           V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 43  VLCCRAPHLI 72
           V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 43  VLCCRAPHLI 72
           V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 43  VLCCRAPHLI 72
           V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 43  VLCCRAPHLI 72
           V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 43  VLCCRAPHLI 72
           V+ CRAPH+I
Sbjct: 518 VILCRAPHII 527


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 43  VLCCRAPHLI 72
           V+ CRAPH+I
Sbjct: 518 VILCRAPHII 527


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,634
Number of Sequences: 438
Number of extensions: 4936
Number of successful extensions: 22
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)