Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0066.Seq
         (809 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021481-7|CAA16331.3|  629|Caenorhabditis elegans Hypothetical ...    32   0.42 
Z81523-2|CAB04248.1|  928|Caenorhabditis elegans Hypothetical pr...    31   0.74 
Z81523-1|CAB04241.1|  944|Caenorhabditis elegans Hypothetical pr...    31   0.74 

>AL021481-7|CAA16331.3|  629|Caenorhabditis elegans Hypothetical
           protein Y43F4B.2 protein.
          Length = 629

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = +1

Query: 241 SPYSDRITIHWPSFYNVVTGKTLALPNLIALQHIPLSPAGVIAKRPAPIALPNS 402
           SP+ D  T + P ++ +   K+  L +L+  + I  SP G+  KR AP+ + N+
Sbjct: 145 SPFEDEETPYHPDWF-LTNSKSHVLRSLMHYRPIANSPRGISTKRGAPLVIFNN 197


>Z81523-2|CAB04248.1|  928|Caenorhabditis elegans Hypothetical
           protein F32H2.1b protein.
          Length = 928

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 225 GPGTQFAL**SYYNSLAVVLQRRDWENPGVTQLNRLAAHPPFASW 359
           G  T++A+   +YN L     +  W N  V +L  L   P F SW
Sbjct: 229 GSRTEWAVKSKWYNELNPKWNKEHWSNEEVEKLKYLRESPKFVSW 273


>Z81523-1|CAB04241.1|  944|Caenorhabditis elegans Hypothetical
           protein F32H2.1a protein.
          Length = 944

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 225 GPGTQFAL**SYYNSLAVVLQRRDWENPGVTQLNRLAAHPPFASW 359
           G  T++A+   +YN L     +  W N  V +L  L   P F SW
Sbjct: 229 GSRTEWAVKSKWYNELNPKWNKEHWSNEEVEKLKYLRESPKFVSW 273


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,540,907
Number of Sequences: 27780
Number of extensions: 336566
Number of successful extensions: 578
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)