Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0065.Seq
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce...    83   2e-17
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar...    35   0.011
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    27   2.9  
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    25   6.7  
SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces p...    25   8.8  

>SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 204

 Score = 83.4 bits (197), Expect = 2e-17
 Identities = 39/103 (37%), Positives = 62/103 (60%)
 Frame = +3

Query: 78  MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTQLPKSIPXGTHXVXRPSRXRX*T 257
           MSI+ YNGG+ VAM G++CVAIA+D R G+Q+ +++   PK    G       +      
Sbjct: 1   MSIMEYNGGSCVAMAGKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDV 60

Query: 258 QTVXQXXXFRXNLYXLKEXXLXRLKXFSXMLSTLLYDRRFGPY 386
           QT+ +   ++ NLY  +E    + K F+ ++S+ LY++RFGPY
Sbjct: 61  QTLYELFRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPY 103



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 23/65 (35%), Positives = 34/65 (52%)
 Frame = +2

Query: 374 FRPLLMEPVIAGLDPLX*PNPYGLXHGLIGCPNDPEDFVGIGPLFEKLYGMCXALWGXPT 553
           F P    PV+AG+       P+      IGC +  EDF+  G   E+LYGMC +++  P 
Sbjct: 100 FGPYFSFPVVAGVSNDN--TPFICGFDSIGCIDFAEDFIVSGTATEQLYGMCESVY-EPN 156

Query: 554 XKPDE 568
            +PD+
Sbjct: 157 LEPDD 161


>SPAC22F8.06 |pam1||20S proteasome component beta
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 34.7 bits (76), Expect = 0.011
 Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 1/98 (1%)
 Frame = +3

Query: 96  NGGAVVAMKGQDCVAIATDKRFGIQAQTVSTQL-PKSIPXGTHXVXRPSRXRX*TQTVXQ 272
           NGG  VA+ G     +A D R  +    ++T+  P+    G   V   S        + +
Sbjct: 12  NGGTTVAIAGDGFAILAGDTR-SVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALVK 70

Query: 273 XXXFRXNLYXLKEXXLXRLKXFSXMLSTLLYDRRFGPY 386
               R +LY          +  + M+ TLLY +RF PY
Sbjct: 71  RIQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPY 108


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = +3

Query: 6   IQYFELITLQ*FQVKKCLSFYITNMSIL----AYNGGAVVAMK 122
           ++YF+ + +   +VK   SF+I N  +L    AYNG   V +K
Sbjct: 441 LKYFDQVVVGLKEVKDAFSFFIFNRFVLVYVPAYNGVDPVTLK 483


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/45 (26%), Positives = 17/45 (37%)
 Frame = -3

Query: 579 SPRXSSGFXVGXPQXAXHIPYSFSNRGPIPTKSSGSFGQPIKPXY 445
           +P+    F     Q A   P   S R P+P K        ++P Y
Sbjct: 342 NPKTPQSFSTNIVQCASPSPLPLSFRSPVPNKDYEYIPSSLQPQY 386


>SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 402

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 443 LXHGLIGCPNDPEDFVGIG 499
           L  G+IG   DP +F GIG
Sbjct: 15  LARGIIGAKADPVNFAGIG 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,318,503
Number of Sequences: 5004
Number of extensions: 42480
Number of successful extensions: 80
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)