Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0065.Seq
(620 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0903 - 25816395-25816493,25816695-25816779,25817390-258174... 88 6e-18
02_01_0614 - 4599035-4599083,4599209-4599303,4599410-4599494,460... 85 4e-17
08_02_1353 + 26335306-26335448,26336025-26336106,26336322-263364... 35 0.045
09_04_0656 + 19267392-19267432,19267530-19267637,19269114-192691... 33 0.14
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389... 29 2.3
06_03_0023 + 15558890-15559117,15559229-15560134 29 3.0
03_01_0369 - 2863159-2863491,2864149-2864214,2865045-2865140,286... 29 3.0
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333... 28 6.9
01_01_0807 + 6277670-6277916,6278020-6278235,6278329-6278426,627... 27 9.1
>06_03_0903 -
25816395-25816493,25816695-25816779,25817390-25817479,
25818566-25818673,25818771-25818952,25819032-25819216,
25820812-25820971
Length = 302
Score = 87.8 bits (208), Expect = 6e-18
Identities = 55/146 (37%), Positives = 77/146 (52%)
Frame = +3
Query: 78 MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTQLPKSIPXGTHXVXRPSRXRX*T 257
MSI YNG AVVAM G++C AIA+D+R G+Q QTV+T + S
Sbjct: 114 MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKIHDKLYIGLSGLATDA 173
Query: 258 QTVXQXXXFRXNLYXLKEXXLXRLKXFSXMLSTLLYDRRFGPYLWNLS*LA*IPYXNPTL 437
QT+ Q FR LY L+E + + F+ ++S LLY++RFGPY +A + N
Sbjct: 174 QTLYQRLVFRHKLYQLREERDMKPQTFASLVSALLYEKRFGPYFCQ-PVIAGLGEDNEP- 231
Query: 438 MVCXMA*LVAQMTLKILWVSGPCSKS 515
+C M + A+ K VSG S+S
Sbjct: 232 FICTMDCIGAKELAKDFVVSGTASES 257
Score = 36.7 bits (81), Expect = 0.015
Identities = 23/65 (35%), Positives = 31/65 (47%)
Frame = +2
Query: 374 FRPLLMEPVIAGLDPLX*PNPYGLXHGLIGCPNDPEDFVGIGPLFEKLYGMCXALWGXPT 553
F P +PVIAGL P+ IG +DFV G E LYG C +++ P
Sbjct: 213 FGPYFCQPVIAGLGEDN--EPFICTMDCIGAKELAKDFVVSGTASESLYGACESMY-KPN 269
Query: 554 XKPDE 568
+P+E
Sbjct: 270 MEPEE 274
>02_01_0614 -
4599035-4599083,4599209-4599303,4599410-4599494,
4600107-4600196,4600772-4600879,4600983-4601197
Length = 213
Score = 85.0 bits (201), Expect = 4e-17
Identities = 53/147 (36%), Positives = 77/147 (52%)
Frame = +3
Query: 75 NMSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTQLPKSIPXGTHXVXRPSRXRX* 254
++ I YNG AVVAM G++C AIA+D+R G+Q QTV+T + S
Sbjct: 9 SLQIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKIHDKLYIGLSGLATD 68
Query: 255 TQTVXQXXXFRXNLYXLKEXXLXRLKXFSXMLSTLLYDRRFGPYLWNLS*LA*IPYXNPT 434
QT+ Q FR LY L+E + + F+ ++S LLY++RFGPY +A + N
Sbjct: 69 AQTLYQRLVFRHKLYQLREERDMKPQAFASLVSALLYEKRFGPYFCQ-PVIAGLG-DNDE 126
Query: 435 LMVCXMA*LVAQMTLKILWVSGPCSKS 515
+C M + A+ K VSG S+S
Sbjct: 127 PFICTMDCIGAKELAKDFVVSGTASES 153
Score = 37.5 bits (83), Expect = 0.008
Identities = 23/65 (35%), Positives = 32/65 (49%)
Frame = +2
Query: 374 FRPLLMEPVIAGLDPLX*PNPYGLXHGLIGCPNDPEDFVGIGPLFEKLYGMCXALWGXPT 553
F P +PVIAGL P+ IG +DFV G E LYG C +++ P+
Sbjct: 109 FGPYFCQPVIAGLGDND--EPFICTMDCIGAKELAKDFVVSGTASESLYGACESMY-KPS 165
Query: 554 XKPDE 568
+P+E
Sbjct: 166 MEPEE 170
>08_02_1353 +
26335306-26335448,26336025-26336106,26336322-26336451,
26336486-26336548,26336549-26336691,26336827-26336913,
26337014-26337088
Length = 240
Score = 35.1 bits (77), Expect = 0.045
Identities = 24/97 (24%), Positives = 36/97 (37%)
Frame = +3
Query: 96 NGGAVVAMKGQDCVAIATDKRFGIQAQTVSTQLPKSIPXGTHXVXRPSRXRX*TQTVXQX 275
NGG VA+ G D +A D R + +S K V S + + + +
Sbjct: 10 NGGTCVAVAGADYCVVAADTRLSVGYSILSRDSSKIAHLADKCVLASSGFQGDVKALQRN 69
Query: 276 XXFRXNLYXLKEXXLXRLKXFSXMLSTLLYDRRFGPY 386
+ LY + +LS LY +RF PY
Sbjct: 70 LTAKELLYEHNHNKKMSCPAMAQLLSNTLYYKRFFPY 106
>09_04_0656 +
19267392-19267432,19267530-19267637,19269114-19269195,
19269637-19269766,19269882-19270024,19270198-19270284,
19270384-19270458
Length = 221
Score = 33.5 bits (73), Expect = 0.14
Identities = 23/97 (23%), Positives = 36/97 (37%)
Frame = +3
Query: 96 NGGAVVAMKGQDCVAIATDKRFGIQAQTVSTQLPKSIPXGTHXVXRPSRXRX*TQTVXQX 275
NGG VA+ G D +A D R + ++ K S + + + +
Sbjct: 12 NGGTCVAIAGADYCVVAADTRLSVGYNILTRDHSKICELADKCALASSGFQGDIKALHKN 71
Query: 276 XXFRXNLYXLKEXXLXRLKXFSXMLSTLLYDRRFGPY 386
R LY + + +LS LY +RF PY
Sbjct: 72 LAARELLYQHQHNKRMSCPAMAQLLSNTLYYKRFFPY 108
>06_03_0099 +
16633928-16638213,16638299-16638386,16638823-16638950,
16640008-16640278
Length = 1590
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 101 GCGSRHEGPRLCGHRYGQAVW 163
GCG R + PRL G Q VW
Sbjct: 159 GCGPRRDAPRLVGRAVRQEVW 179
>06_03_0023 + 15558890-15559117,15559229-15560134
Length = 377
Score = 29.1 bits (62), Expect = 3.0
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -2
Query: 142 MATQSWPFMATTAPPLYASIDILVI 68
++T +WPF+A A L S+D +++
Sbjct: 4 LSTAAWPFLAAVAAALLCSVDAVIV 28
>03_01_0369 -
2863159-2863491,2864149-2864214,2865045-2865140,
2865530-2865632,2865771-2865838,2866570-2866712,
2867050-2867242,2867602-2867640,2867742-2867807,
2868617-2869651
Length = 713
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -1
Query: 497 RYPQNLQGHLGN-QSSHXTDHKGWVXIGDLG 408
R P +QG+ N Q++ T +GW+ GDLG
Sbjct: 438 RGPNVMQGYFNNVQATEFTIKQGWLHTGDLG 468
>12_01_0423 +
3337401-3337419,3337777-3338235,3338650-3338735,
3338974-3339022,3339225-3339533,3339555-3339710,
3339871-3340086,3340404-3340906,3341050-3341116,
3341215-3341272,3341561-3341699,3341840-3341956,
3342069-3342246,3342459-3343093
Length = 996
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -3
Query: 510 SNRGPIPTKSSGSFGQPIKPXYRP*GLGXH-RGSRPAMTGSISKG 379
+ P T S+G+FGQP P + G + S PA GS+S G
Sbjct: 58 TGNSPFGTTSTGAFGQPSAPTFGSTSTGAFGQPSAPAF-GSMSTG 101
>01_01_0807 +
6277670-6277916,6278020-6278235,6278329-6278426,
6278570-6278843,6282015-6282247
Length = 355
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Frame = -3
Query: 468 GQPIKPXYRP*GLGXHRGSRPAMTGSIS------KGRNVGHTI 358
G P+ P + HRG+ A+TG+ S +GR +GHT+
Sbjct: 87 GLPLLPPSKAKNATFHRGANFAITGATSLDTPYFQGRGLGHTV 129
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,547,107
Number of Sequences: 37544
Number of extensions: 293768
Number of successful extensions: 549
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -